GCFC2

General Information

Gene Name : GCFC2
Gene ID : ENSG00000005436.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GCFC2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GCFC2	ENSG00000005436.13	19.15	18.59	18.87	ENCSR000AEF
HepG2	GCFC2	ENSG00000005436.13	17.59	36.25	26.92	ENCSR985KAT
K562	GCFC2	ENSG00000005436.13	17.03	16.34	16.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GCFC2 is not avaliable on ENCORE database.

Proteins bound to RNA

GCFC2 RNA is bound by 16 proteins.

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eCLIP assay for GCFC2 is not avaliable on ENCORE database.

16 proteins are bound to GCFC2 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	75913155	75913216	-	intron-Distal	6.97064	34.88565	HepG2	QKI
chr2	75913216	75913239	-	intron-Distal	5.85080	27.34652	HepG2	QKI
chr2	75913239	75913299	-	intron-Distal	5.72504	20.24885	HepG2	QKI
chr2	75929485	75929575	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.20496	15.43672	HepG2	U2AF2
chr2	75916209	75916298	-	5'-UTR,CDS,intron-Distal	4.22699	12.93761	HepG2	BCLAF1
chr2	75914942	75915068	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16171	12.07231	HepG2	BCLAF1
chr2	75928307	75928427	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.90535	11.13876	HepG2	BCLAF1
chr2	75937780	75938002	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.28089	10.32664	HepG2	SRSF1
chr2	75937572	75937700	-	5'-UTR,CDS,intron-Distal	3.53548	9.91754	HepG2	EFTUD2
chr2	75909948	75910020	-	intron-Distal	4.34054	8.01961	HepG2	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 41 entries

eCLIP assay for GCFC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GCFC2 is not available on ENCORE database.
73 RBPs can affect the levels of GCFC2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GCFC2 is not available on ENCORE database.

73 RBPs can affect the gene expression of GCFC2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GCFC2	ENSG00000005436.9	305.91170	850.17590	-1.47460	20.11500	18.65430	HepG2	DDX6
GCFC2	ENSG00000005436.9	1242.70170	709.64600	0.80820	17.54080	16.02350	K562	DDX47
GCFC2	ENSG00000005436.9	409.96390	843.28530	-1.04050	12.27040	11.13360	HepG2	PUF60
GCFC2	ENSG00000005436.9	567.34100	1025.84520	-0.85450	10.61870	9.00850	K562	PUF60
GCFC2	ENSG00000005436.9	436.75900	817.44270	-0.90430	8.32530	7.33560	HepG2	EIF2S1
GCFC2	ENSG00000005436.9	1321.73500	891.84710	0.56750	7.91340	6.94040	HepG2	QKI
GCFC2	ENSG00000005436.9	830.36010	491.42990	0.75670	7.52710	6.54670	HepG2	HNRNPLL
GCFC2	ENSG00000005436.9	783.84240	486.43480	0.68820	6.77190	5.70940	HepG2	SF3B1
GCFC2	ENSG00000005436.9	220.01960	389.48050	-0.82390	6.38690	5.51660	K562	HNRNPC
GCFC2	ENSG00000005436.9	572.20610	911.31830	-0.67140	6.06350	5.06480	HepG2	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GCFC2 is not available on ENCORE database.

17 RBPs can affect the splicing of GCFC2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	GCFC2	ENSG00000005436.9	chr2	-	75929405	75929573	75929405	75929549	75933648	75933777	0.37200	0.00000	0.00006	longer	K562	U2AF2
A3SS	GCFC2	ENSG00000005436.9	chr2	-	75929324	75929573	75929324	75929549	75933648	75933777	0.18000	0.00000	0.00011	longer	HepG2	U2AF1
SE	GCFC2	ENSG00000005436.9	chr2	-	75919102	75919226	75917719	75917845	75921366	75921553	0.36600	0.00003	0.04594	included	K562	QKI
A3SS	GCFC2	ENSG00000005436.9	chr2	-	75929405	75929573	75929405	75929549	75933648	75933777	0.34400	0.00003	0.00286	longer	K562	U2AF1
A3SS	GCFC2	ENSG00000005436.9	chr2	-	75929324	75929573	75929324	75929549	75933648	75933777	-0.19600	0.00003	0.04981	shorter	HepG2	RBFOX2
SE	GCFC2	ENSG00000005436.9	chr2	-	75929438	75929573	75928315	75928413	75933648	75933777	-0.84500	0.00004	0.01020	excluded	HepG2	RBFOX2
SE	GCFC2	ENSG00000005436.9	chr2	-	75919102	75919226	75917719	75917845	75921366	75921553	0.18500	0.00011	0.01195	included	K562	HNRNPL
SE	GCFC2	ENSG00000005436.9	chr2	-	75919102	75919226	75917723	75917845	75921366	75921553	0.15100	0.00026	0.04883	included	K562	EIF3G
A3SS	GCFC2	ENSG00000005436.9	chr2	-	75929405	75929573	75929405	75929549	75933648	75933777	0.11700	0.00026	0.02502	longer	HepG2	SF3A3
SE	GCFC2	ENSG00000005436.9	chr2	-	75919102	75919226	75917723	75917845	75921366	75921553	0.24600	0.00034	0.00873	included	K562	SRSF1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GCFC2

General Information

Functions

Localization

Domains (AlphaFold: GCFC2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GCFC2 is not avaliable on ENCORE database.

16 proteins are bound to GCFC2 RNA:

eCLIP assay for GCFC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GCFC2 is not available on ENCORE database.

73 RBPs can affect the gene expression of GCFC2 :

The Knockdown/knockout RNA-Seq assay for GCFC2 is not available on ENCORE database.

17 RBPs can affect the splicing of GCFC2 :

The Knockdown/knockout RNA-Seq assay for GCFC2 is not avaliable on ENCORE database.