FAM53B

General Information

Gene Name : FAM53B
Gene ID : ENSG00000189319.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM53B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM53B	ENSG00000189319.13	1.70	4.43	3.06	ENCSR000AEF
HepG2	FAM53B	ENSG00000189319.13	10.07	4.62	7.35	ENCSR985KAT
K562	FAM53B	ENSG00000189319.13	5.41	3.36	4.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM53B is not avaliable on ENCORE database.

Proteins bound to RNA

FAM53B RNA is bound by 16 proteins.

CanvasJS.com

eCLIP assay for FAM53B is not avaliable on ENCORE database.

16 proteins are bound to FAM53B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	126358404	126358501	-	intron-Distal	5.76666	13.49443	HepG2	PCBP2
chr10	126308499	126308620	-	3'-UTR,intron-Distal	3.13667	8.63173	K562	UPF1
chr10	126428230	126428303	-	intron-Distal	3.67438	8.17775	HepG2	RBFOX2
chr10	126308094	126308154	-	3'-UTR,intron-Distal	4.09514	6.36782	K562	UPF1
chr10	126370317	126370382	-	3'-UTR,CDS,intron-Distal	4.90483	5.85529	K562	RBM15
chr10	126309976	126309987	-	3'-UTR,intron-Distal	3.10740	5.74118	K562	YBX3
chr10	126308087	126308148	-	3'-UTR,intron-Distal	5.47071	5.63073	HepG2	DDX55
chr10	126431440	126431515	-	5'-UTR,intron-Distal	4.43678	5.40320	K562	NONO
chr10	126432769	126432836	-	5'-UTR,intron-Distal	4.65953	5.35746	HepG2	DDX3X
chr10	126309992	126310033	-	3'-UTR,intron-Distal	4.60046	5.25389	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for FAM53B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM53B is not available on ENCORE database.
86 RBPs can affect the levels of FAM53B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM53B is not available on ENCORE database.

86 RBPs can affect the gene expression of FAM53B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM53B	ENSG00000189319.9	1542.90260	705.91920	1.12800	20.68080	19.25090	K562	AQR
FAM53B	ENSG00000189319.9	1195.32090	703.65690	0.76440	15.74040	14.50130	K562	AGGF1
FAM53B	ENSG00000189319.9	777.28300	422.86670	0.87810	14.63690	13.57160	HepG2	PTBP1
FAM53B	ENSG00000189319.9	1003.53210	625.37400	0.68220	13.42590	11.95540	K562	NSUN2
FAM53B	ENSG00000189319.9	257.61090	493.76200	-0.93860	12.73100	11.46140	HepG2	ZC3H8
FAM53B	ENSG00000189319.9	807.59170	470.61130	0.77900	11.24720	10.29620	HepG2	NELFE
FAM53B	ENSG00000189319.9	1309.69450	810.94420	0.69150	11.61320	9.75400	K562	EIF4G2
FAM53B	ENSG00000189319.9	199.50440	414.29640	-1.05420	10.22910	8.88650	HepG2	CALR
FAM53B	ENSG00000189319.9	859.79720	563.89010	0.60850	9.34390	8.31590	HepG2	SUCLG1
FAM53B	ENSG00000189319.9	183.27200	441.39740	-1.26810	8.40450	7.37180	HepG2	HNRNPLL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM53B is not available on ENCORE database.

6 RBPs can affect the splicing of FAM53B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FAM53B	ENSG00000189319.9	chr10	-	126384726	126384781			126370175	126370948	126395204	126395456	-0.32900	0.00000	0.00001	excluded	K562	AKAP8L
SE	FAM53B	ENSG00000189319.9	chr10	-	126384726	126384781			126370175	126370948	126395204	126395456	-0.31300	0.00000	0.00003	excluded	K562	RBM15
SE	FAM53B	ENSG00000189319.9	chr10	-	126384726	126384781			126370175	126370948	126395204	126395456	-0.32500	0.00000	0.00000	excluded	K562	AGGF1
MXE	FAM53B	ENSG00000189319.9	chr10	-	126370175	126370948	126384726	126384781	126310239	126312173	126395204	126395456	-0.30100	0.00004	0.01496	2included	K562	HNRNPA1
SE	FAM53B	ENSG00000189319.9	chr10	-	126384726	126384781			126370175	126370948	126395204	126395456	0.23500	0.00040	0.07183	included	K562	APOBEC3C
SE	FAM53B	ENSG00000189319.9	chr10	-	126370175	126370948			126310239	126312173	126384726	126384781	-0.12700	0.00192	0.02904	excluded	K562	PUS1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM53B

General Information

Functions

Localization

Domains (AlphaFold: FAM53B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM53B is not avaliable on ENCORE database.

16 proteins are bound to FAM53B RNA:

eCLIP assay for FAM53B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM53B is not available on ENCORE database.

86 RBPs can affect the gene expression of FAM53B :

The Knockdown/knockout RNA-Seq assay for FAM53B is not available on ENCORE database.

6 RBPs can affect the splicing of FAM53B :

The Knockdown/knockout RNA-Seq assay for FAM53B is not avaliable on ENCORE database.