FAM46C

General Information

Gene Name       : FAM46C
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM46C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM46C is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM46C RNA is bound by 8 proteins.  







eCLIP assay for FAM46C is not avaliable on ENCORE database.





8 proteins are bound to FAM46C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1118170570118170632+3'-UTR3.085593.58517K562TARDBP
chr1118170485118170524+3'-UTR4.528853.88917K562DDX6
chr1118168590118168653+3'-UTR4.913856.64872K562UPF1
chr1118170385118170433+3'-UTR3.796625.24353K562UPF1
chr1118169321118169392+3'-UTR4.746145.97091K562TARDBP
chr1118168240118168313+3'-UTR3.134864.39499K562FAM120A
chr1118170478118170534+3'-UTR5.1404415.83369K562UPF1
chr1118169311118169362+3'-UTR4.020123.66349K562LIN28B
chr1118170550118170643+3'-UTR5.434188.76530K562UPF1
chr1118167421118167481+3'-UTR5.2313511.85613K562PUM2
chr1118170471118170542+3'-UTR5.3802123.07350K562TARDBP
chr1118167535118167608+3'-UTR3.106594.67068K562FAM120A
chr1118167748118167790+3'-UTR3.185953.31456K562TIA1
chr1118168117118168183+3'-UTR4.496287.89398K562FAM120A
chr1118168401118168442+3'-UTR3.641694.82552K562UPF1
chr1118165921118165968+CDS4.193854.46921K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM46C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM46C is not available on ENCORE database.

  • 117 RBPs can affect the levels of FAM46C.  








The Knockdown/knockout RNA-Seq assay for FAM46C is not available on ENCORE database.





117 RBPs can affect the gene expression of FAM46C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM46CENSG00000183508.433.2042011.373301.545601.908301.45690HepG2AKAP1
FAM46CENSG00000183508.491.181707.130403.6766017.1352015.69280HepG2AUH
FAM46CENSG00000183508.438.216307.133002.421504.421003.30850HepG2BCLAF1
FAM46CENSG00000183508.478.1245012.517702.6417010.976709.83130HepG2CKAP4
FAM46CENSG00000183508.40.8273010.36500-3.647102.227001.61100HepG2DDX21
FAM46CENSG00000183508.40.8680010.11510-3.542702.103401.31770HepG2DDX24
FAM46CENSG00000183508.431.046303.846103.012804.504003.26760HepG2DDX59
FAM46CENSG00000183508.4138.173309.364203.8831022.5231020.98910HepG2DDX6
FAM46CENSG00000183508.464.710008.993602.846908.457507.45900HepG2EIF2S1
FAM46CENSG00000183508.4116.0539036.639501.663206.866805.12150HepG2GRSF1
FAM46CENSG00000183508.443.7012011.952901.870204.533303.30800HepG2HDGF
FAM46CENSG00000183508.48.6158033.50720-1.959403.372901.85500HepG2HNRNPA0
FAM46CENSG00000183508.410.7515034.27910-1.672802.966501.39940HepG2HNRNPD
FAM46CENSG00000183508.491.192709.435903.2726013.0780011.66350HepG2HNRNPK
FAM46CENSG00000183508.4135.6154011.975303.501309.840708.64520HepG2HNRNPL
FAM46CENSG00000183508.410.1623037.75170-1.893303.619402.22390HepG2KHDRBS1
FAM46CENSG00000183508.452.4336010.744602.286806.094703.74670HepG2CCAR2
FAM46CENSG00000183508.440.623007.391002.458404.522703.10320HepG2NONO
FAM46CENSG00000183508.46.4734036.18200-2.482704.524803.36910HepG2PABPC1
FAM46CENSG00000183508.479.127106.956403.5077015.0090013.77740HepG2PCBP1
FAM46CENSG00000183508.432.5113011.153401.543402.455501.47560HepG2PCBP2
FAM46CENSG00000183508.49.1511035.49630-1.955603.664201.91030HepG2PNPT1
FAM46CENSG00000183508.431.795906.957302.192103.583002.82310HepG2RBM25
FAM46CENSG00000183508.43.3883039.77950-3.553407.696806.38160HepG2RPS3A
FAM46CENSG00000183508.40.8064013.49350-4.064602.982201.86670HepG2RPS5
FAM46CENSG00000183508.426.144106.167902.083502.737301.95400HepG2RRP9
FAM46CENSG00000183508.412.7988037.45810-1.549302.648501.36650HepG2SART3
FAM46CENSG00000183508.4121.278107.368704.0407023.0669021.64110HepG2SF3B4
FAM46CENSG00000183508.435.4275010.454301.760703.096401.40860HepG2SND1
FAM46CENSG00000183508.4199.292707.729204.6883043.5049042.14340HepG2SRFBP1
FAM46CENSG00000183508.424.880203.902202.672503.012401.96000HepG2SRSF3
FAM46CENSG00000183508.437.3763012.289001.604702.999202.34960HepG2SRSF5
FAM46CENSG00000183508.453.5616010.580302.339705.084903.35480HepG2XRCC5
FAM46CENSG00000183508.41028.83400785.708400.388802.811501.57720K562ABCF1
FAM46CENSG00000183508.4379.77330190.105000.998204.210302.07200K562ADAR
FAM46CENSG00000183508.41539.410401003.142300.617806.257904.63570K562AKAP8
FAM46CENSG00000183508.41771.79310963.825300.8783013.2989012.14780K562AQR
FAM46CENSG00000183508.4775.47500996.70530-0.362103.558602.51020K562ATP5C1
FAM46CENSG00000183508.4746.50580523.229400.512605.498604.12930K562BCLAF1
FAM46CENSG00000183508.4981.41820338.828601.534205.239004.02660K562BOP1
FAM46CENSG00000183508.4880.48830547.284900.685906.157103.97680K562BUD13
FAM46CENSG00000183508.4886.84790575.654300.623407.060404.67010K562CEBPZ
FAM46CENSG00000183508.41100.73790695.322900.662605.304403.54700K562CIRBP
FAM46CENSG00000183508.41199.84740724.291800.728107.073204.67280K562CKAP4
FAM46CENSG00000183508.41820.77110525.308201.7932023.9223021.06500K562CNOT7
FAM46CENSG00000183508.4486.27420619.75930-0.349902.346501.33490K562CPEB4
FAM46CENSG00000183508.4821.18470360.243201.1886019.8596017.74570K562CPSF6
FAM46CENSG00000183508.42639.088301050.984301.3282044.3811041.35120K562CELF1
FAM46CENSG00000183508.4352.96350196.093000.847904.349302.01500K562DDX1
FAM46CENSG00000183508.4944.34870661.686300.513105.744603.95750K562DDX21
FAM46CENSG00000183508.41244.16380641.409900.9558012.6421011.35670K562DDX47
FAM46CENSG00000183508.4795.52590559.933600.506603.692901.72730K562DDX51
FAM46CENSG00000183508.4334.28300200.168900.739804.679302.91090K562DNAJC21
FAM46CENSG00000183508.4451.99010212.183301.090905.728103.20470K562DNAJC2
FAM46CENSG00000183508.41415.13970536.564601.3990020.9030017.87770K562EEF2
FAM46CENSG00000183508.41244.39480518.427001.2631022.6816019.67500K562EFTUD2
FAM46CENSG00000183508.4344.03340189.342200.861503.548802.39620K562EIF3A
FAM46CENSG00000183508.41207.66430555.078601.1214014.6008012.06140K562EIF3D
FAM46CENSG00000183508.4721.19630530.312400.443403.358202.45670K562EIF4A3
FAM46CENSG00000183508.41673.89770854.822200.9694025.5179022.95370K562EIF4G2
FAM46CENSG00000183508.4947.44970600.539300.657704.523102.38240K562ESF1
FAM46CENSG00000183508.4717.20470483.268300.569505.125902.90050K562FASTKD2
FAM46CENSG00000183508.4949.27790564.798800.749008.852407.24220K562FIP1L1
FAM46CENSG00000183508.4828.46640366.594801.1762016.8438014.65020K562FMR1
FAM46CENSG00000183508.4706.32170310.746501.1845014.6943012.45560K562FTO
FAM46CENSG00000183508.4651.76480399.355200.706607.983405.57930K562FUS
FAM46CENSG00000183508.4694.69110427.541800.700208.236606.35460K562GLRX3
FAM46CENSG00000183508.4884.26910343.920401.3623023.8984021.39790K562GPKOW
FAM46CENSG00000183508.41603.53210866.051500.8886015.6599013.82880K562GRSF1
FAM46CENSG00000183508.4788.89860522.129000.595306.148204.58320K562HNRNPA1
FAM46CENSG00000183508.4657.03920280.285701.2290017.4101015.99590K562HNRNPC
FAM46CENSG00000183508.4614.79010464.557600.404102.175501.35430K562HNRNPM
FAM46CENSG00000183508.4578.56570765.74370-0.404402.752501.95950K562HSPD1
FAM46CENSG00000183508.4477.23210659.70030-0.467103.589302.19170K562IGF2BP3
FAM46CENSG00000183508.41130.16590479.368901.2372010.377907.63450K562ILF2
FAM46CENSG00000183508.4438.53390194.446201.1732011.290508.52210K562ILF3
FAM46CENSG00000183508.4898.66580293.725801.6132021.6430018.97540K562KRR1
FAM46CENSG00000183508.41035.26890680.481200.605307.357405.76080K562MATR3
FAM46CENSG00000183508.4597.24720335.714500.831008.502106.90480K562METAP2
FAM46CENSG00000183508.41709.09170911.169000.9073015.0545012.63690K562MSI2
FAM46CENSG00000183508.41084.61260449.501101.2707019.0476017.20440K562MTPAP
FAM46CENSG00000183508.4712.75980393.887300.855504.462201.71030K562NFX1
FAM46CENSG00000183508.4767.31930510.818500.586904.605102.81990K562NONO
FAM46CENSG00000183508.41139.07280499.454701.1893038.0171035.80220K562NSUN2
FAM46CENSG00000183508.41160.99920504.666501.2019011.419208.96220K562PABPC1
FAM46CENSG00000183508.41123.60280606.704900.8890012.6000010.42250K562PCBP2
FAM46CENSG00000183508.43457.20220859.682102.0076060.1713056.86840K562PCBP3
FAM46CENSG00000183508.42854.29460659.411902.1138019.5520017.53680K562POLR2G
FAM46CENSG00000183508.4846.32600504.489100.746307.420706.19420K562PRPF8
FAM46CENSG00000183508.41301.45050932.686500.480604.615203.56560K562PUF60
FAM46CENSG00000183508.41445.90870991.980800.543507.399505.58760K562PUM1
FAM46CENSG00000183508.41563.24100972.024000.685406.244704.78400K562PUM2
FAM46CENSG00000183508.4762.30800942.18210-0.305601.760201.30690K562PUS1
FAM46CENSG00000183508.4815.35780635.335600.359802.497201.70180K562RBM22
FAM46CENSG00000183508.4319.05090229.301600.476402.548301.60080K562RCC2
FAM46CENSG00000183508.41142.32510515.819401.1469012.8944010.21380K562RRP9
FAM46CENSG00000183508.4727.84120478.475200.605103.050001.44390K562SBDS
FAM46CENSG00000183508.41084.42960607.448700.8360011.108908.40560K562SDAD1
FAM46CENSG00000183508.4655.49350431.699200.602503.284601.57080K562SERBP1
FAM46CENSG00000183508.41392.18820492.806701.4982020.1049018.07450K562SF3A3
FAM46CENSG00000183508.4740.20970327.164801.1778013.5411011.31180K562SF3B1
FAM46CENSG00000183508.41229.10000643.823600.932804.960203.01160K562SFPQ
FAM46CENSG00000183508.4470.23440205.055001.197308.001405.91700K562SLBP
FAM46CENSG00000183508.4949.72810504.888600.9114012.9604011.13630K562SRPK2
FAM46CENSG00000183508.4847.80430649.343900.384602.188401.55120K562SRSF1
FAM46CENSG00000183508.4735.68510515.919600.511803.136801.99940K562SRSF4
FAM46CENSG00000183508.41110.25600590.569600.9106018.2332015.30730K562SRSF7
FAM46CENSG00000183508.41163.74570750.577700.632608.765706.12810K562SRSF9
FAM46CENSG00000183508.4657.23910465.956700.496104.512202.82600K562SSB
FAM46CENSG00000183508.41260.29920741.048000.766009.448706.79990K562SSRP1
FAM46CENSG00000183508.41319.62120677.781900.961104.772003.05750K562STAU1
FAM46CENSG00000183508.4911.32540468.272800.960504.904402.72910K562STIP1
FAM46CENSG00000183508.41026.29950813.783800.334602.886401.34690K562SUCLG1
FAM46CENSG00000183508.41153.73850725.278300.669602.726901.31510K562SUPT6H
FAM46CENSG00000183508.41419.99070488.455001.5395023.5441020.69730K562SUPV3L1
FAM46CENSG00000183508.4463.32450241.715100.938607.943606.28740K562TIAL1
FAM46CENSG00000183508.4961.67440660.685600.541504.533302.63320K562TRIP6
FAM46CENSG00000183508.4950.04100625.001900.604004.718202.35800K562TRNAU1AP
FAM46CENSG00000183508.4937.44500511.271400.8745014.1591012.32220K562U2AF2
FAM46CENSG00000183508.4986.29680516.969200.9318011.674209.54130K562UCHL5
FAM46CENSG00000183508.4812.27280529.581000.617008.441707.26850K562UPF1
FAM46CENSG00000183508.4930.83560628.600900.566304.523002.97950K562UTP3
FAM46CENSG00000183508.4913.64210453.148101.011505.694904.41820K562WDR3
FAM46CENSG00000183508.41033.01980471.204901.1323013.2192011.53770K562WDR43
FAM46CENSG00000183508.41934.818701085.735400.8334014.5121012.38600K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM46C is not available on ENCORE database.






No RBPs affect the alternative splcing events of FAM46C on ENCORE database.





The Knockdown/knockout RNA-Seq assay for FAM46C is not avaliable on ENCORE database.