ERP29

General Information

Gene Name : ERP29
Gene ID : ENSG00000089248.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ERP29)

Not Available

Antibody Validation

Bethyl Labs: A305-406A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ERP29	ENSG00000089248.6	37.84	72.12	54.98	ENCSR000AEF
HepG2	ERP29	ENSG00000089248.6	173.99	129.97	151.98	ENCSR985KAT
K562	ERP29	ENSG00000089248.6	79.56	71.31	75.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
ERP29		A305-406A	1					BGKcLV40-31, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ERP29	K562	CRISPR			ERP29-BGKcLV40-31,ERP29-BGKcLV40-32	NT-BGKcLV40-1,NT-BGKcLV40-2	68.4,66.5	Submitting	ENCORE2
ERP29	HepG2	CRISPR			BGHcLV41-51,BGHcLV41-52	BGHcLV41-1,BGHcLV41-2	0.0,0.0	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
ERP29	Product_ID: A305-406A Lot_ID: 1 Source: Bethyl Labs Target Name: ERP29-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ERP29 is not avaliable on ENCORE database.

Proteins bound to RNA

ERP29 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for ERP29 is not avaliable on ENCORE database.

23 proteins are bound to ERP29 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	112460470	112460607	+	3'-UTR	5.47485	400.00000	HepG2	LARP4
chr12	112460471	112460609	+	3'-UTR	4.04385	64.17894	HepG2	DDX55
chr12	112460531	112460601	+	3'-UTR	4.90194	56.69802	K562	DDX6
chr12	112460473	112460531	+	3'-UTR	4.33231	52.12755	K562	DDX6
chr12	112460474	112460599	+	3'-UTR	5.36226	51.17469	K562	UPF1
chr12	112459998	112460085	+	3'-UTR,CDS	5.57903	44.60170	K562	SND1
chr12	112460557	112460665	+	3'-UTR	4.20432	44.15486	K562	PABPC4
chr12	112460141	112460242	+	3'-UTR,CDS	5.20390	40.94044	HepG2	SND1
chr12	112460476	112460541	+	3'-UTR	4.12882	36.88333	K562	PABPC4
chr12	112460480	112460560	+	3'-UTR	4.34709	32.48196	HepG2	DDX6
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for ERP29 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ERP29 is not available on ENCORE database.
85 RBPs can affect the levels of ERP29.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.

85 RBPs can affect the gene expression of ERP29 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ERP29	ENSG00000089248.6	749.95330	2038.66520	-1.44280	28.00370	26.02260	HepG2	RRP9
ERP29	ENSG00000089248.6	2489.59750	4144.28690	-0.73520	25.34240	24.00610	HepG2	PTBP1
ERP29	ENSG00000089248.6	1742.59780	3267.71960	-0.90700	22.47470	20.65200	K562	PTBP1
ERP29	ENSG00000089248.6	1572.16440	2628.04180	-0.74120	15.77060	13.93980	K562	POLR2G
ERP29	ENSG00000089248.6	2535.59400	3485.32370	-0.45900	13.47670	12.23760	HepG2	CKAP4
ERP29	ENSG00000089248.6	9480.17410	6072.39770	0.64250	12.94300	11.80020	HepG2	ETF1
ERP29	ENSG00000089248.6	3213.66850	2269.95460	0.50150	12.46930	11.39730	HepG2	TRIM56
ERP29	ENSG00000089248.6	5848.04390	4126.56530	0.50290	11.64360	10.50060	HepG2	CELF1
ERP29	ENSG00000089248.6	5060.78460	3596.37410	0.49270	11.28890	9.98030	K562	EIF2S2
ERP29	ENSG00000089248.6	2784.68110	5075.27550	-0.86600	9.96040	9.11420	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.

24 RBPs can affect the splicing of ERP29 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.12500	0.00000	0.00000	excluded	K562	WDR43
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112461255	0.06000	0.00000	0.00000	included	HepG2	AKAP1
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.12300	0.00000	0.00002	excluded	K562	UCHL5
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.10700	0.00000	0.00939	excluded	K562	EXOSC5
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112461255	0.07600	0.00000	0.00000	included	HepG2	SRSF1
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.07800	0.00000	0.00012	excluded	K562	HNRNPUL1
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.11300	0.00000	0.00000	excluded	K562	UPF1
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112460972	-0.12600	0.00000	0.00010	excluded	K562	HNRNPC
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112461255	0.05200	0.00001	0.00290	included	HepG2	TAF15
SE	ERP29	ENSG00000089248.6	chr12	+	112457559	112457698	112451119	112451413	112459953	112461255	-0.06800	0.00003	0.00063	excluded	K562	AQR

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ERP29

General Information

Functions

Localization

Domains (AlphaFold: ERP29)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ERP29 is not avaliable on ENCORE database.

23 proteins are bound to ERP29 RNA:

eCLIP assay for ERP29 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.

85 RBPs can affect the gene expression of ERP29 :

The Knockdown/knockout RNA-Seq assay for ERP29 is not available on ENCORE database.

24 RBPs can affect the splicing of ERP29 :

The Knockdown/knockout RNA-Seq assay for ERP29 is not avaliable on ENCORE database.