CWC15

General Information

Gene Name : CWC15
Gene ID : ENSG00000150316.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CWC15)

Not Available

Antibody Validation

View validation images for all CWC15 antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CWC15	ENSG00000150316.11	67.68	53.41	60.55	ENCSR000AEF
HepG2	CWC15	ENSG00000150316.11	30.89	48.64	39.77	ENCSR985KAT
K562	CWC15	ENSG00000150316.11	58.06	65.11	61.59	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CWC15-BGKcLV28-K562	ENCSR825RYR	CWC15	K562	Released		ENCSR220DTX	CRISPR	KD% = 51.7,53.4

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CWC15	ENCAB616CRG	A304-900A	1			Released, ENCODE4		BGKcLV28-53, Released, ENCODE4
CWC15	ENCAB952MZJ	A304-901A	1			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
CWC15	K562	CRISPR	ENCSR825RYR	ENCSR220DTX	CWC15-BGKcLV28-53,CWC15-BGKcLV28-54	NT-BGKcLV28-1,NT-BGKcLV28-2	51.7,53.4	Released	ENCODE4
CWC15	HepG2	CRISPR			BGHcLV29-53,BGHcLV29-54	BGHcLV29-1,BGHcLV29-2	0,0	NotSatisfied	ENCODE4
CWC15	HepG2	CRISPR			BGHcLV34-19,BGHcLV34-20	BGHcLV34-1,BGHcLV34-2	0.0,0.0	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CWC15	Product_ID: A304-900A Lot_ID: 1 Source: Bethyl Labs Target Name: CWC15-human
CWC15	Product_ID: A304-901A Lot_ID: 1 Source: Bethyl Labs Target Name: CWC15-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CWC15 is not avaliable on ENCORE database.

Proteins bound to RNA

CWC15 RNA is bound by 17 proteins.

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eCLIP assay for CWC15 is not avaliable on ENCORE database.

17 proteins are bound to CWC15 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	94704531	94704651	-	CDS,intron-Distal,intron-Proximal	3.38868	16.15040	K562	ZNF622
chr11	94706659	94706709	-	5'-UTR,intron-Distal,intron-Proximal	4.05601	13.57683	K562	ZNF622
chr11	94703181	94703260	-	CDS,intron-Distal	3.36328	13.21784	K562	UCHL5
chr11	94703174	94703241	-	CDS,intron-Distal	3.09734	12.62180	K562	ZNF622
chr11	94696575	94696617	-	CDS,intron-Distal	3.88506	10.31435	K562	PUM2
chr11	94703152	94703259	-	CDS,intron-Distal,intron-Proximal	3.17805	9.95292	HepG2	BCLAF1
chr11	94703152	94703181	-	CDS,intron-Distal,intron-Proximal	4.55206	9.77102	K562	UCHL5
chr11	94704140	94704225	-	CDS,intron-Distal,intron-Proximal	3.04319	9.24685	K562	ZNF622
chr11	94703241	94703261	-	CDS,intron-Distal,intron-Proximal	3.91820	8.70187	K562	ZNF622
chr11	94706552	94706613	-	intron-Distal	4.61607	8.52787	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 40 entries

eCLIP assay for CWC15 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CWC15 is not available on ENCORE database.
56 RBPs can affect the levels of CWC15.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CWC15 is not available on ENCORE database.

56 RBPs can affect the gene expression of CWC15 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CWC15	ENSG00000150316.7	2134.36200	934.67270	1.19120	24.11020	22.51670	K562	PUS1
CWC15	ENSG00000150316.7	317.22640	773.01940	-1.28500	16.67340	15.10870	HepG2	G3BP1
CWC15	ENSG00000150316.7	1436.24270	905.68010	0.66510	13.21200	12.07090	K562	AGGF1
CWC15	ENSG00000150316.7	1506.05390	910.63100	0.72570	13.30580	11.99960	K562	RBM15
CWC15	ENSG00000150316.7	362.88690	777.31680	-1.09900	11.76110	10.59380	HepG2	DDX6
CWC15	ENSG00000150316.7	446.25480	740.59400	-0.73080	10.62070	9.55620	HepG2	PCBP1
CWC15	ENSG00000150316.7	252.89680	583.78970	-1.20690	11.60870	8.86790	HepG2	ZRANB2
CWC15	ENSG00000150316.7	489.28040	753.58400	-0.62310	7.57870	6.76290	HepG2	PTBP1
CWC15	ENSG00000150316.7	1119.16980	686.33430	0.70530	7.99330	6.71190	K562	PRPF8
CWC15	ENSG00000150316.7	1447.11570	942.38990	0.61870	7.54410	6.41880	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 59 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CWC15 is not available on ENCORE database.

7 RBPs can affect the splicing of CWC15 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CWC15	ENSG00000150316.7	chr11	-	94704347	94704436	94703653	94704229	94704538	94704651	0.06700	0.00000	included	HepG2	U2AF2
SE	CWC15	ENSG00000150316.7	chr11	-	94704347	94704436	94703653	94704229	94704538	94704651	0.05200	0.00001	included	K562	U2AF2
A3SS	CWC15	ENSG00000150316.7	chr11	-	94703152	94703341	94703152	94703260	94704140	94704278	0.09400	0.00000	longer	K562	AQR
A3SS	CWC15	ENSG00000150316.7	chr11	-	94696532	94696754	94696532	94696679	94699459	94699607	0.08100	0.00000	longer	K562	AQR
A3SS	CWC15	ENSG00000150316.7	chr11	-	94705218	94705433	94705218	94705357	94706661	94706776	0.08900	0.00000	longer	K562	AQR
RI	CWC15	ENSG00000150316.7	chr11	-	94704140	94704651	94704140	94704229	94704538	94704651	0.11500	0.00000	included	K562	PUS1
RI	CWC15	ENSG00000150316.7	chr11	-	94704140	94704651	94704140	94704229	94704538	94704651	0.10600	0.00000	included	HepG2	U2AF2
RI	CWC15	ENSG00000150316.7	chr11	-	94704140	94704651	94704140	94704229	94704538	94704651	0.05800	0.00000	included	K562	AGGF1
RI	CWC15	ENSG00000150316.7	chr11	-	94704140	94704651	94704140	94704229	94704538	94704651	0.06200	0.00000	included	K562	AKAP8L
RI	CWC15	ENSG00000150316.7	chr11	-	94704140	94704651	94704140	94704229	94704538	94704651	0.07700	0.00001	included	HepG2	U2AF1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CWC15

General Information

Functions

Localization

Domains (AlphaFold: CWC15)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CWC15 is not avaliable on ENCORE database.

17 proteins are bound to CWC15 RNA:

eCLIP assay for CWC15 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CWC15 is not available on ENCORE database.

56 RBPs can affect the gene expression of CWC15 :

The Knockdown/knockout RNA-Seq assay for CWC15 is not available on ENCORE database.

7 RBPs can affect the splicing of CWC15 :

The Knockdown/knockout RNA-Seq assay for CWC15 is not avaliable on ENCORE database.