CRBN

General Information

Gene Name : CRBN
Gene ID : ENSG00000113851.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CRBN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CRBN	ENSG00000113851.14	22.57	17.76	20.16	ENCSR000AEF
HepG2	CRBN	ENSG00000113851.14	19.47	27.09	23.28	ENCSR985KAT
K562	CRBN	ENSG00000113851.14	31.95	32.51	32.23	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CRBN is not avaliable on ENCORE database.

Proteins bound to RNA

CRBN RNA is bound by 9 proteins.

CanvasJS.com

eCLIP assay for CRBN is not avaliable on ENCORE database.

9 proteins are bound to CRBN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	3216891	3216957	-	CDS,intron-Distal,intron-Proximal	5.72321	12.88554	K562	UCHL5
chr3	3215689	3215747	-	CDS,intron-Distal,intron-Proximal	3.84011	11.47097	K562	AQR
chr3	3221261	3221290	-	intron-Distal	4.96921	10.24966	K562	AQR
chr3	3197799	3197895	-	intron-Distal,intron-Proximal	4.07885	8.79285	K562	AQR
chr3	3215744	3215859	-	CDS,intron-Distal,intron-Proximal	3.16931	8.20368	K562	ZNF622
chr3	3221304	3221344	-	CDS,intron-Distal	4.41858	7.60776	K562	ZNF622
chr3	3209317	3209391	-	CDS,intron-Distal,intron-Proximal	4.20487	7.60776	K562	ZNF622
chr3	3221290	3221305	-	intron-Distal	3.49595	7.36655	K562	AQR
chr3	3221303	3221342	-	CDS,intron-Distal	5.02202	7.02609	K562	UCHL5
chr3	3216934	3216955	-	CDS,intron-Distal,intron-Proximal	3.39207	6.97987	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for CRBN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CRBN is not available on ENCORE database.
56 RBPs can affect the levels of CRBN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CRBN is not available on ENCORE database.

56 RBPs can affect the gene expression of CRBN :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CRBN	ENSG00000113851.9	680.49510	1223.45270	-0.84630	13.74700	12.16990	K562	SRSF1
CRBN	ENSG00000113851.9	730.64310	1248.03700	-0.77240	12.52070	11.15980	K562	PTBP1
CRBN	ENSG00000113851.9	377.54130	816.67410	-1.11310	12.37460	11.10780	HepG2	MATR3
CRBN	ENSG00000113851.9	245.67000	463.66580	-0.91640	11.77090	10.72560	HepG2	TRIM56
CRBN	ENSG00000113851.9	330.18650	551.96470	-0.74130	9.56850	8.57700	HepG2	ACO1
CRBN	ENSG00000113851.9	288.94190	483.10490	-0.74160	9.45100	8.17590	HepG2	ILF2
CRBN	ENSG00000113851.9	663.31280	423.37500	0.64770	8.67100	7.59200	HepG2	ZC3H8
CRBN	ENSG00000113851.9	1115.75230	782.63080	0.51150	8.07770	7.34500	HepG2	SRFBP1
CRBN	ENSG00000113851.9	736.12030	1061.78830	-0.52850	7.89340	6.75380	K562	UPF1
CRBN	ENSG00000113851.9	662.97710	973.51740	-0.55420	7.14280	6.23250	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CRBN is not available on ENCORE database.

21 RBPs can affect the splicing of CRBN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	0.38500	0.00001	0.00029	included	K562	SRSF1
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	-0.12500	0.00001	0.00549	excluded	K562	HNRNPA1
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	-0.10300	0.00001	0.01867	excluded	K562	DDX21
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	0.12300	0.00001	0.00062	included	HepG2	SRSF1
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	0.09600	0.00002	0.00068	included	K562	PUS1
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	-0.05900	0.00002	0.00961	excluded	K562	EIF4G2
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	-0.07200	0.00002	0.00411	excluded	K562	CPSF6
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	0.26600	0.00003	0.04870	included	K562	ILF3
SE	CRBN	ENSG00000113851.9	chr3	-	3214189	3214330	3209317	3209477	3214459	3214609	-0.10600	0.00003	0.00900	excluded	K562	SRSF7
SE	CRBN	ENSG00000113851.9	chr3	-	3195643	3195746	3195107	3195172	3197902	3197965	-0.17700	0.00005	0.00145	excluded	K562	PUS1

Showing 1 to 10 of 29 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CRBN

General Information

Functions

Localization

Domains (AlphaFold: CRBN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CRBN is not avaliable on ENCORE database.

9 proteins are bound to CRBN RNA:

eCLIP assay for CRBN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CRBN is not available on ENCORE database.

56 RBPs can affect the gene expression of CRBN :

The Knockdown/knockout RNA-Seq assay for CRBN is not available on ENCORE database.

21 RBPs can affect the splicing of CRBN :

The Knockdown/knockout RNA-Seq assay for CRBN is not avaliable on ENCORE database.