COX6C

General Information

Gene Name : COX6C
Gene ID : ENSG00000164919.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COX6C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COX6C	ENSG00000164919.10	330.08	269.12	299.60	ENCSR000AEF
HepG2	COX6C	ENSG00000164919.10	229.15	295.26	262.20	ENCSR985KAT
K562	COX6C	ENSG00000164919.10	309.57	241.48	275.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COX6C is not avaliable on ENCORE database.

Proteins bound to RNA

COX6C RNA is bound by 18 proteins.

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eCLIP assay for COX6C is not avaliable on ENCORE database.

18 proteins are bound to COX6C RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	100904270	100904280	-	5'-UTR,intron-Distal,intron-Proximal	4.87726	400.00000	K562	DDX3X
chr8	100905865	100905927	-	5'-UTR,intron-Distal,intron-Proximal	5.14845	400.00000	K562	DDX3X
chr8	100890396	100890496	-	3'-UTR,intron-Distal,intron-Proximal	7.27029	97.16721	HepG2	SUB1
chr8	100904185	100904270	-	5'-UTR,CDS,intron-Distal	3.55215	87.94116	K562	DDX3X
chr8	100904133	100904181	-	CDS,intron-Distal,intron-Proximal	4.92195	61.95047	K562	RPS3
chr8	100890449	100890494	-	3'-UTR,intron-Distal,intron-Proximal	4.94780	52.80170	HepG2	LARP4
chr8	100904181	100904244	-	CDS,intron-Distal	5.39104	51.97803	K562	RPS3
chr8	100890402	100890449	-	3'-UTR,intron-Distal	4.87454	46.08885	HepG2	LARP4
chr8	100905864	100905931	-	5'-UTR,intron-Distal,intron-Proximal	4.90376	20.27184	K562	RPS3
chr8	100904181	100904260	-	5'-UTR,CDS,intron-Distal	3.08655	18.39033	K562	GEMIN5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for COX6C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COX6C is not available on ENCORE database.
106 RBPs can affect the levels of COX6C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.

106 RBPs can affect the gene expression of COX6C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COX6C	ENSG00000164919.6	633.10650	2112.18390	-1.73820	86.27740	83.83050	HepG2	ETF1
COX6C	ENSG00000164919.6	1028.04110	1804.12660	-0.81140	21.59700	20.20460	HepG2	SF3B4
COX6C	ENSG00000164919.6	1723.15220	2777.61250	-0.68880	18.67960	16.99540	K562	UPF1
COX6C	ENSG00000164919.6	1049.45760	1732.84090	-0.72350	16.91340	15.78130	HepG2	PTBP1
COX6C	ENSG00000164919.6	1030.78660	2009.24570	-0.96290	18.57710	15.71070	K562	TRIM56
COX6C	ENSG00000164919.6	1115.25300	1796.11580	-0.68750	16.16560	14.87790	HepG2	RECQL
COX6C	ENSG00000164919.6	3919.57730	2556.81820	0.61620	14.38320	13.19320	K562	AGGF1
COX6C	ENSG00000164919.6	1140.52290	2193.15280	-0.94330	14.09200	12.82790	K562	HNRNPC
COX6C	ENSG00000164919.6	1248.23430	1928.49270	-0.62760	13.74650	12.71170	HepG2	NELFE
COX6C	ENSG00000164919.6	1899.85750	2619.59240	-0.46350	13.75320	12.26850	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.

10 RBPs can affect the splicing of COX6C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.14700	0.00000	0.00000	1included	K562	UCHL5
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904275	100890376	100890493	100905866	100905909	0.16000	0.00000	0.00001	1included	K562	XRN2
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.13500	0.00000	0.00000	1included	K562	XRN2
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.12400	0.00000	0.00009	1included	K562	TRA2A
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.09600	0.00000	0.00010	1included	K562	TAF15
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.12600	0.00000	0.00000	1included	K562	SUPV3L1
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904275	100890376	100890493	100905866	100905909	0.12500	0.00002	0.00147	1included	K562	UCHL5
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.08100	0.00003	0.00996	1included	K562	TBRG4
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904280	100890367	100890493	100905866	100905935	0.11200	0.00004	0.00644	1included	K562	HNRNPK
MXE	COX6C	ENSG00000164919.6	chr8	-	100899717	100899846	100904135	100904275	100890376	100890493	100905866	100905909	0.11100	0.00013	0.00546	1included	K562	SUPV3L1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COX6C

General Information

Functions

Localization

Domains (AlphaFold: COX6C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COX6C is not avaliable on ENCORE database.

18 proteins are bound to COX6C RNA:

eCLIP assay for COX6C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.

106 RBPs can affect the gene expression of COX6C :

The Knockdown/knockout RNA-Seq assay for COX6C is not available on ENCORE database.

10 RBPs can affect the splicing of COX6C :

The Knockdown/knockout RNA-Seq assay for COX6C is not avaliable on ENCORE database.