COMMD3

General Information

Gene Name       : COMMD3
Gene ID             : ENSG00000148444.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COMMD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COMMD3ENSG00000148444.1547.2946.3546.82ENCSR000AEF
HepG2COMMD3ENSG00000148444.1519.3328.3323.83ENCSR985KAT
K562COMMD3ENSG00000148444.1545.6347.2946.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COMMD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COMMD3 RNA is bound by 7 proteins.  







eCLIP assay for COMMD3 is not avaliable on ENCORE database.





7 proteins are bound to COMMD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr102260716922607244+3'-UTR,CDS,intron-Distal,intron-Proximal3.952906.98930HepG2U2AF2
chr102260892522608985+3'-UTR,CDS,intron-Distal3.317456.15304K562YBX3
chr102260752222607648+3'-UTR,CDS,intron-Distal,intron-Proximal4.200765.56912HepG2AQR
chr102260755622607612+3'-UTR,CDS,intron-Distal,intron-Proximal3.626136.21987K562AQR
chr102260766722607795+CDS,intron-Distal,intron-Proximal4.573359.81400K562EFTUD2
chr102260534922605488+CDS,intron-Proximal3.269116.75993K562DDX3X
chr102260787522607931+CDS,intron-Distal,intron-Proximal3.176913.49653K562PRPF8
chr102260735722607420+intron-Distal3.132513.90146K562KHSRP
chr102260658522606723+intron-Distal,intron-Proximal3.532397.01633K562KHSRP
chr102260736822607422+intron-Distal4.573688.53255K562PRPF8
chr102260766322607704+intron-Distal,intron-Proximal3.508394.23459K562PRPF8
chr102260765522607734+intron-Distal,intron-Proximal4.153156.49249HepG2EFTUD2
chr102260736922607436+intron-Distal5.1385013.23057K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COMMD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COMMD3 is not available on ENCORE database.

  • 53 RBPs can affect the levels of COMMD3.  








The Knockdown/knockout RNA-Seq assay for COMMD3 is not available on ENCORE database.





53 RBPs can affect the gene expression of COMMD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COMMD3ENSG00000148444.11366.75550249.286300.556902.450601.56360HepG2ABCF1
COMMD3ENSG00000148444.11401.69090288.208700.478902.298201.44800HepG2BCCIP
COMMD3ENSG00000148444.11352.28380250.452300.492102.436201.59400HepG2BCLAF1
COMMD3ENSG00000148444.11401.01960294.433200.445603.275602.56260HepG2CKAP4
COMMD3ENSG00000148444.11390.90580265.019700.560603.411302.66460HepG2DDX21
COMMD3ENSG00000148444.11361.65700259.381600.479402.657501.76360HepG2DDX24
COMMD3ENSG00000148444.11331.41830216.490800.614203.627102.15010HepG2DDX47
COMMD3ENSG00000148444.11448.36360281.760500.670105.314404.43050HepG2DKC1
COMMD3ENSG00000148444.11682.52800450.397800.599604.753103.70320HepG2EIF4G2
COMMD3ENSG00000148444.11297.27690169.279800.812302.529501.56070HepG2FTO
COMMD3ENSG00000148444.11362.75060519.07450-0.517003.122802.38730HepG2FXR1
COMMD3ENSG00000148444.11326.79080481.53590-0.559303.304502.58160HepG2G3BP1
COMMD3ENSG00000148444.11399.68850534.47200-0.419202.114501.55770HepG2NCBP2
COMMD3ENSG00000148444.11383.52510273.541100.487502.873201.42650HepG2NIP7
COMMD3ENSG00000148444.11434.24800287.310400.595802.433501.45640HepG2PCBP2
COMMD3ENSG00000148444.11315.36610218.648600.528302.589301.80650HepG2PRPF8
COMMD3ENSG00000148444.11369.95170478.54810-0.371302.258001.64940HepG2PUM2
COMMD3ENSG00000148444.11447.45920299.972600.576805.279604.47830HepG2PUS1
COMMD3ENSG00000148444.11692.13510277.364601.3192010.189408.89960HepG2RAVER1
COMMD3ENSG00000148444.11471.73270594.13130-0.332802.230301.73410HepG2NELFE
COMMD3ENSG00000148444.11412.47460553.36790-0.423903.267302.60490HepG2RECQL
COMMD3ENSG00000148444.11330.22570237.693600.474202.408301.76360HepG2RPLP0
COMMD3ENSG00000148444.11151.88320220.33470-0.536702.256101.69500HepG2RPS19
COMMD3ENSG00000148444.11366.66780216.294700.761404.584703.60290HepG2RRP9
COMMD3ENSG00000148444.11409.76150555.80350-0.439803.448002.79720HepG2SF3B4
COMMD3ENSG00000148444.11254.77700327.85030-0.363802.041601.47630HepG2SMN1
COMMD3ENSG00000148444.11659.25230496.749300.408203.657803.10630HepG2SRFBP1
COMMD3ENSG00000148444.11373.58380194.710400.940005.830804.33400HepG2SRSF3
COMMD3ENSG00000148444.11371.46940471.98600-0.345502.378001.85900HepG2SRSF9
COMMD3ENSG00000148444.11775.89630431.300800.8471014.6663013.67390HepG2SSB
COMMD3ENSG00000148444.11213.74430309.47090-0.533903.635203.00760HepG2TRIM56
COMMD3ENSG00000148444.11305.65840466.44970-0.609802.563601.75790HepG2UBE2L3
COMMD3ENSG00000148444.11423.75700258.360100.713803.873302.67280HepG2UPF2
COMMD3ENSG00000148444.11440.67650277.692000.666104.315003.41510HepG2XRN2
COMMD3ENSG00000148444.111036.10500781.873800.406104.835704.12000K562AGGF1
COMMD3ENSG00000148444.111107.95810813.580800.445404.078303.28370K562AKAP8L
COMMD3ENSG00000148444.111050.78760853.652700.299602.716701.81180K562ATP5C1
COMMD3ENSG00000148444.11603.64650403.442500.581203.629802.13830K562EEF2
COMMD3ENSG00000148444.11826.78890632.474600.386403.217702.45140K562EIF2S2
COMMD3ENSG00000148444.111424.630401110.386400.359403.784102.68770K562EIF4G2
COMMD3ENSG00000148444.11364.07230487.53920-0.421302.780101.48830K562EWSR1
COMMD3ENSG00000148444.11701.53860411.835700.768408.163406.62310K562FIP1L1
COMMD3ENSG00000148444.111141.62410842.942200.437504.064903.15120K562GRSF1
COMMD3ENSG00000148444.111027.57410649.883400.660902.821401.58920K562HNRNPA2B1
COMMD3ENSG00000148444.11547.06750338.762700.691305.031303.73270K562HNRNPM
COMMD3ENSG00000148444.11908.36010558.331000.702007.412406.12610K562HSPD1
COMMD3ENSG00000148444.111248.05830863.392900.531505.778504.48430K562KIF1C
COMMD3ENSG00000148444.11533.35720725.13200-0.443103.553502.59490K562MAGOH
COMMD3ENSG00000148444.111109.93650826.495400.425303.612502.33070K562MAK16
COMMD3ENSG00000148444.11952.27290677.953500.490102.271801.49170K562NAA15
COMMD3ENSG00000148444.11580.34690379.334200.613304.423803.47600K562PRPF8
COMMD3ENSG00000148444.11544.00460704.50420-0.373002.802302.13410K562PTBP1
COMMD3ENSG00000148444.111506.88840806.808900.9012013.6137012.45480K562PUS1
COMMD3ENSG00000148444.11820.21150544.850200.590002.939701.47270K562RAVER1
COMMD3ENSG00000148444.111091.70420786.146900.473605.634904.81380K562RBM15
COMMD3ENSG00000148444.11487.76330675.58650-0.470003.555102.59520K562RBM22
COMMD3ENSG00000148444.11238.72720346.53370-0.537603.013901.97680K562RCC2
COMMD3ENSG00000148444.11585.44640387.866900.593903.375801.89990K562RRP9
COMMD3ENSG00000148444.111025.159101366.06370-0.414204.051002.34580K562UBE2L3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COMMD3 is not available on ENCORE database.





23 RBPs can affect the splicing of COMMD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOMMD3ENSG00000148444.11chr10+226075812260764222607200226072352260788722607947-0.079000.001430.01646excludedK562AQR
SECOMMD3ENSG00000148444.11chr10+226077342260779122607200226072352260788722607947-0.070000.004410.07373excludedK562U2AF1
SECOMMD3ENSG00000148444.11chr10+2260728122607368226070332260709722607581226076420.800000.002000.06768includedK562PTBP1
A3SSCOMMD3ENSG00000148444.11chr10+226072002260764222607281226076422260703322607097-0.110000.000660.02721shorterK562U2AF2
RICOMMD3ENSG00000148444.11chr10+226072002260764222607200226072352260758122607642-0.070000.002070.09721excludedK562NONO
RICOMMD3ENSG00000148444.11chr10+2260686622607097226068662260692422607033226070970.091000.000000.00000includedK562PUS1
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.083000.000020.00022includedK562PUS1
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.159000.000280.00316includedHepG2U2AF2
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.174000.000030.00093includedHepG2PRPF8
RICOMMD3ENSG00000148444.11chr10+226072002260764222607200226072352260758122607642-0.079000.000640.07308excludedK562MATR3
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.056000.000440.02180includedK562HNRNPUL1
RICOMMD3ENSG00000148444.11chr10+2260686622607097226068662260692422607033226070970.071000.000000.00000includedK562AGGF1
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.056000.003810.04140includedK562AGGF1
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.121000.003620.06869includedHepG2FTO
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.166000.000010.00019includedHepG2QKI
RICOMMD3ENSG00000148444.11chr10+2260686622607097226068662260692422607033226070970.062000.000000.00000includedK562AKAP8L
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.097000.002860.02799includedHepG2TAF15
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.092000.000000.00012includedK562RBM15
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.088000.002120.02998includedK562U2AF2
RICOMMD3ENSG00000148444.11chr10+226072002260794722607200226072352260788722607947-0.433000.000000.00004excludedK562U2AF2
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.108000.000010.00009includedK562AQR
RICOMMD3ENSG00000148444.11chr10+2260720022607642226072002260723522607581226076420.067000.000080.01373includedK562LARP4
RICOMMD3ENSG00000148444.11chr10+226072002260764222607200226072352260758122607642-0.055000.003780.05327excludedK562FXR1
MXECOMMD3ENSG00000148444.11chr10+22607200226072352260758122607642226070332260709722607887226079470.054000.001760.029211includedK562SRSF1
MXECOMMD3ENSG00000148444.11chr10+22607033226070972260773422607791226068122260692422607887226079470.114000.008260.080951includedK562U2AF2
MXECOMMD3ENSG00000148444.11chr10+2260720022607235226072812260736822607033226070972260758122607642-0.051000.000150.006142includedK562TARDBP
MXECOMMD3ENSG00000148444.11chr10+22607200226072352260728122607642226070332260709722607734226077910.175000.000870.029231includedK562EFTUD2
MXECOMMD3ENSG00000148444.11chr10+22607200226072352260758122607642226070332260709722607734226077910.176000.000830.028311includedK562EFTUD2
MXECOMMD3ENSG00000148444.11chr10+22606812226069242260720022607235226049022260548522607581226076420.189000.000010.001051includedHepG2SUPV3L1
MXECOMMD3ENSG00000148444.11chr10+22606812226069242260773422607791226053572260548522607887226079470.125000.000960.046111includedK562TIA1
MXECOMMD3ENSG00000148444.11chr10+22606812226069242260720022607235226049022260548522607581226076420.195000.000050.004031includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COMMD3 is not avaliable on ENCORE database.