CMTM6

General Information

Gene Name       : CMTM6
Gene ID             : ENSG00000091317.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CMTM6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CMTM6ENSG00000091317.747.0341.5044.27ENCSR000AEF
HepG2CMTM6ENSG00000091317.715.7032.6824.19ENCSR985KAT
K562CMTM6ENSG00000091317.715.4012.7314.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CMTM6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CMTM6 RNA is bound by 7 proteins.  







eCLIP assay for CMTM6 is not avaliable on ENCORE database.





7 proteins are bound to CMTM6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33252290132522956-3'-UTR,intron-Distal4.538284.72618HepG2FUBP3
chr33252349432523545-3'-UTR,intron-Distal3.397896.34863HepG2LIN28B
chr33252348332523548-3'-UTR,intron-Distal3.586874.96321K562LIN28B
chr33252497332525054-3'-UTR,intron-Distal4.8872713.83395HepG2FUBP3
chr33252311132523162-3'-UTR,intron-Distal4.903635.48503HepG2LIN28B
chr33252416032524210-3'-UTR,intron-Distal5.7287910.27311K562PABPC4
chr33254422732544303-5'-UTR,CDS,intron-Distal,intron-Proximal4.8871546.39068HepG2DDX3X
chr33254416332544302-5'-UTR,CDS,intron-Distal,intron-Proximal3.285014.41784HepG2GRWD1
chr33254418432544307-5'-UTR,CDS,intron-Distal,intron-Proximal3.4525012.02688K562DDX3X
chr33254415132544224-CDS,intron-Distal4.159149.88902HepG2DDX3X
chr33253324332533296-CDS,intron-Distal3.866383.45860K562TIA1
chr33254187632541962-intron-Distal3.077244.16517K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CMTM6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CMTM6 is not available on ENCORE database.

  • 108 RBPs can affect the levels of CMTM6.  








The Knockdown/knockout RNA-Seq assay for CMTM6 is not available on ENCORE database.





108 RBPs can affect the gene expression of CMTM6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CMTM6ENSG00000091317.71336.594401043.886900.356502.492501.47100HepG2AATF
CMTM6ENSG00000091317.71121.183101399.95610-0.320402.227501.33290HepG2ADAR
CMTM6ENSG00000091317.7991.986901409.39530-0.506708.412707.16680HepG2AKAP8L
CMTM6ENSG00000091317.71744.847601358.673900.360802.845301.93370HepG2BCLAF1
CMTM6ENSG00000091317.71451.045801074.155500.433804.075203.36500HepG2BOP1
CMTM6ENSG00000091317.71608.183901148.448700.485606.098005.00830HepG2CALR
CMTM6ENSG00000091317.73054.253102109.292800.534005.999004.89150HepG2CIRBP
CMTM6ENSG00000091317.7468.502501446.72030-1.6267018.6738016.74460HepG2CNOT7
CMTM6ENSG00000091317.72565.609501911.848600.424207.082806.14390HepG2CELF1
CMTM6ENSG00000091317.71667.237501127.122800.564707.581406.08310HepG2DDX24
CMTM6ENSG00000091317.7843.283901164.72990-0.465903.278901.75990HepG2DDX28
CMTM6ENSG00000091317.74592.259302570.398900.8371013.0195011.75480HepG2DDX3X
CMTM6ENSG00000091317.71642.595302207.77810-0.426603.088702.43940HepG2DDX6
CMTM6ENSG00000091317.71464.891701113.883900.395103.088202.11740HepG2EEF2
CMTM6ENSG00000091317.71446.246301060.676100.447202.812601.69820HepG2AGO1
CMTM6ENSG00000091317.71332.450502122.63650-0.671807.740706.78490HepG2EIF2S1
CMTM6ENSG00000091317.71284.08530904.259400.505804.433003.30960HepG2EIF3D
CMTM6ENSG00000091317.71351.653902028.10710-0.5854013.3931011.82890HepG2EIF4G1
CMTM6ENSG00000091317.71751.853101328.062800.399502.821402.04290HepG2FIP1L1
CMTM6ENSG00000091317.7923.733401182.83390-0.356702.300101.57850HepG2FUBP3
CMTM6ENSG00000091317.71333.620302330.55630-0.8053011.552209.75200HepG2G3BP2
CMTM6ENSG00000091317.71066.30280805.136300.405202.996802.06180HepG2GEMIN5
CMTM6ENSG00000091317.72085.445901396.057700.578903.195701.69780HepG2HLTF
CMTM6ENSG00000091317.72409.826201889.345100.350905.052903.85220HepG2HNRNPA2B1
CMTM6ENSG00000091317.71976.935001583.039500.320502.692602.00770HepG2HNRNPC
CMTM6ENSG00000091317.71172.707101484.51960-0.340203.984203.13960HepG2HNRNPF
CMTM6ENSG00000091317.71551.697702222.69970-0.518505.729204.75240HepG2HNRNPK
CMTM6ENSG00000091317.71401.968801872.84690-0.417808.964007.81750HepG2HNRNPL
CMTM6ENSG00000091317.71783.944701066.852200.741609.673308.57600HepG2HNRNPLL
CMTM6ENSG00000091317.71121.19150916.451300.290802.304001.43640HepG2HNRNPM
CMTM6ENSG00000091317.71776.776402231.74400-0.328902.324501.70010HepG2IGF2BP2
CMTM6ENSG00000091317.71123.540401606.33170-0.5157011.8810010.48240HepG2ILF2
CMTM6ENSG00000091317.7994.960001410.24790-0.503202.999301.61360HepG2ILF3
CMTM6ENSG00000091317.71848.654901483.327200.317502.828501.60160HepG2LIN28B
CMTM6ENSG00000091317.71726.215302367.36110-0.455703.963003.17880HepG2MAGOH
CMTM6ENSG00000091317.71888.928701075.077400.8130015.0015013.27790HepG2MSI2
CMTM6ENSG00000091317.7742.580201117.45380-0.589606.099303.79800HepG2NUP35
CMTM6ENSG00000091317.7860.655901556.57890-0.8549022.0413020.10390HepG2PARN
CMTM6ENSG00000091317.71928.481101379.706400.483002.833501.78040HepG2PCBP2
CMTM6ENSG00000091317.71079.117001402.60990-0.378304.514703.59480HepG2PPIL4
CMTM6ENSG00000091317.7588.29170887.23330-0.592808.443407.19360HepG2PRPF4
CMTM6ENSG00000091317.72000.183801186.161500.7537010.276008.84640HepG2PRPF8
CMTM6ENSG00000091317.71403.083502062.98330-0.5561011.6979010.72650HepG2PTBP1
CMTM6ENSG00000091317.73165.484301945.994100.7018012.2212011.08740HepG2PUF60
CMTM6ENSG00000091317.71407.747902234.43490-0.6665013.6460012.41010HepG2QKI
CMTM6ENSG00000091317.72647.371301331.634400.991308.240007.06380HepG2RAVER1
CMTM6ENSG00000091317.7767.912201703.05330-1.1491020.2496017.57290HepG2RBM27
CMTM6ENSG00000091317.71967.694402295.96980-0.222602.618702.08990HepG2NELFE
CMTM6ENSG00000091317.71577.577402138.26150-0.438708.211407.23350HepG2RECQL
CMTM6ENSG00000091317.71112.363601603.30530-0.527404.664603.25310HepG2RPS5
CMTM6ENSG00000091317.7574.90440883.11810-0.619305.471004.16100HepG2SERBP1
CMTM6ENSG00000091317.7503.411401551.03060-1.623407.167304.83420HepG2SF1
CMTM6ENSG00000091317.72826.163001325.648001.0920014.4062012.79960HepG2SF3A3
CMTM6ENSG00000091317.71301.323901055.999900.301302.117801.49460HepG2SF3B1
CMTM6ENSG00000091317.71655.426801865.76440-0.172602.003801.38900HepG2SLBP
CMTM6ENSG00000091317.7920.610301356.76630-0.559503.899702.74480HepG2SMNDC1
CMTM6ENSG00000091317.71945.447201174.975400.727405.534204.41830HepG2SNRNP70
CMTM6ENSG00000091317.72911.190102478.327200.232103.310402.77810HepG2SRFBP1
CMTM6ENSG00000091317.72788.401802241.964000.314604.935104.35040HepG2SRSF1
CMTM6ENSG00000091317.71751.363401244.393700.492902.983301.73070HepG2SUB1
CMTM6ENSG00000091317.72653.973002185.121800.280304.380603.63210HepG2SUCLG1
CMTM6ENSG00000091317.71268.091702014.99980-0.6681014.3219013.19250HepG2TAF15
CMTM6ENSG00000091317.7984.005401528.05020-0.6350010.354309.49400HepG2TIAL1
CMTM6ENSG00000091317.71973.391501136.202500.7964011.8917010.56150HepG2U2AF1
CMTM6ENSG00000091317.7547.24640904.08350-0.724306.853805.64580HepG2UCHL5
CMTM6ENSG00000091317.71914.595601175.647900.7035019.3752017.85130HepG2UPF1
CMTM6ENSG00000091317.7930.304601401.59000-0.591303.370402.25790HepG2UPF2
CMTM6ENSG00000091317.71466.458401208.396000.279102.969101.88910HepG2UTP18
CMTM6ENSG00000091317.71800.632401135.040700.665708.213307.27030HepG2UTP3
CMTM6ENSG00000091317.72008.384901464.265200.455802.705701.66320HepG2XRCC6
CMTM6ENSG00000091317.71097.896001506.43560-0.456403.156502.38310HepG2XRN2
CMTM6ENSG00000091317.71090.97800875.572500.317203.719302.95990HepG2ZC3H8
CMTM6ENSG00000091317.72157.675801292.986500.7387026.3994025.14690HepG2ZNF622
CMTM6ENSG00000091317.7668.17980393.826300.762607.842605.81380K562AARS
CMTM6ENSG00000091317.71187.77270566.566301.0678026.8780025.22210K562AGGF1
CMTM6ENSG00000091317.7959.88950622.549200.624606.685104.99110K562AKAP8
CMTM6ENSG00000091317.7791.97030589.532600.425803.172902.47280K562AKAP8L
CMTM6ENSG00000091317.71685.222201025.080600.717108.992908.03290K562AQR
CMTM6ENSG00000091317.7775.01070618.551600.325202.522201.65220K562ATP5C1
CMTM6ENSG00000091317.71128.77620677.095100.7372011.109208.75800K562CCDC124
CMTM6ENSG00000091317.7283.31280631.76320-1.157003.495402.27820K562CNOT7
CMTM6ENSG00000091317.7730.26670521.188600.486504.356203.00720K562DDX3X
CMTM6ENSG00000091317.71029.92410668.075000.624407.022306.05040K562DDX47
CMTM6ENSG00000091317.7853.87070634.412700.428504.282603.15900K562DKC1
CMTM6ENSG00000091317.71674.82290704.178501.2499029.0128027.12700K562EIF2S2
CMTM6ENSG00000091317.7885.77000439.314501.011603.970402.70300K562EIF3D
CMTM6ENSG00000091317.7243.52150354.79550-0.542903.367001.95190K562EXOSC5
CMTM6ENSG00000091317.7583.88560364.886700.678103.354601.43040K562FAM120A
CMTM6ENSG00000091317.71044.62050566.281800.8833017.0243015.63560K562FXR1
CMTM6ENSG00000091317.7639.43200411.153900.637003.227801.67160K562GEMIN5
CMTM6ENSG00000091317.7338.29450472.24870-0.481303.523802.23810K562GLRX3
CMTM6ENSG00000091317.7595.89240416.242800.517503.012102.03530K562HNRNPM
CMTM6ENSG00000091317.7949.16920685.910400.468502.715701.92780K562HSPD1
CMTM6ENSG00000091317.7632.21700833.87710-0.399402.206601.32090K562IGF2BP2
CMTM6ENSG00000091317.71568.597301213.091800.370704.378901.93620K562CCAR2
CMTM6ENSG00000091317.71008.76540625.660100.689003.788402.80140K562KIF1C
CMTM6ENSG00000091317.7681.14990874.87000-0.361102.798501.87000K562MATR3
CMTM6ENSG00000091317.7194.76900344.79410-0.824006.126404.79750K562METAP2
CMTM6ENSG00000091317.7855.73230491.274800.800506.356904.81170K562NAA15
CMTM6ENSG00000091317.7821.23880543.726200.594803.721102.27290K562NCBP2
CMTM6ENSG00000091317.71698.811801151.927300.560406.381304.08510K562NOL12
CMTM6ENSG00000091317.7378.27030551.61800-0.544303.489302.66110K562NSUN2
CMTM6ENSG00000091317.71195.98360780.011300.616507.035205.45080K562PCBP2
CMTM6ENSG00000091317.7989.66470574.575000.784304.356802.04630K562PRPF6
CMTM6ENSG00000091317.71248.35130399.090501.6451035.3419032.72780K562PRPF8
CMTM6ENSG00000091317.71985.549501148.997000.7891011.8346010.13630K562PUF60
CMTM6ENSG00000091317.71500.851401197.451700.325703.427602.35700K562PUM2
CMTM6ENSG00000091317.71513.77900584.692701.3723027.8681026.12950K562PUS1
CMTM6ENSG00000091317.71092.59940578.366900.917606.942104.60600K562RAVER1
CMTM6ENSG00000091317.71046.33520569.663400.8771015.4073013.99020K562RBM15
CMTM6ENSG00000091317.7620.17780889.80870-0.520803.599101.75870K562RBM17
CMTM6ENSG00000091317.71093.58750816.776500.421003.572802.60900K562RBM22
CMTM6ENSG00000091317.71254.68920859.496000.545705.287803.71040K562NELFE
CMTM6ENSG00000091317.7414.96020615.61730-0.569104.473702.20190K562RECQL
CMTM6ENSG00000091317.7759.40510406.662600.900906.508005.24510K562RPS19
CMTM6ENSG00000091317.7548.64890335.940200.707604.904903.58390K562SF3B1
CMTM6ENSG00000091317.7858.88870630.406000.446104.299603.22740K562SF3B4
CMTM6ENSG00000091317.7782.02000557.750500.487506.034504.71480K562SRPK2
CMTM6ENSG00000091317.7543.61030347.205300.646705.964404.75060K562SYNCRIP
CMTM6ENSG00000091317.7244.63160371.65720-0.603403.316502.28620K562TIAL1
CMTM6ENSG00000091317.7541.12890799.72040-0.563505.010603.45800K562TRA2A
CMTM6ENSG00000091317.7965.70500587.687200.716405.217403.61730K562U2AF1
CMTM6ENSG00000091317.7919.05980606.910600.598607.231905.93980K562U2AF2
CMTM6ENSG00000091317.7365.75700500.47020-0.452402.980602.07310K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CMTM6 is not available on ENCORE database.





1 RBPs can affect the splicing of CMTM6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCMTM6ENSG00000091317.7chr3-3253320132533441325332013253337832544099325449000.292000.000020.00023longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CMTM6 is not avaliable on ENCORE database.