CLPP

General Information

Gene Name : CLPP
Gene ID : ENSG00000125656.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CLPP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CLPP	ENSG00000125656.9	4.64	25.57	15.11	ENCSR000AEF
HepG2	CLPP	ENSG00000125656.9	77.36	19.32	48.34	ENCSR985KAT
K562	CLPP	ENSG00000125656.9	78.58	28.38	53.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CLPP is not avaliable on ENCORE database.

Proteins bound to RNA

CLPP RNA is bound by 9 proteins.

CanvasJS.com

eCLIP assay for CLPP is not avaliable on ENCORE database.

9 proteins are bound to CLPP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	6368833	6368857	+	3'-UTR	6.63246	29.96773	K562	PABPC4
chr19	6362200	6362336	+	intron-Distal	6.79675	29.40935	HepG2	PCBP2
chr19	6362472	6362538	+	CDS,intron-Proximal	6.02429	20.03354	K562	YBX3
chr19	6368857	6368892	+	3'-UTR	5.77841	17.53659	K562	PABPC4
chr19	6364511	6364583	+	CDS,intron-Distal	4.16837	14.92488	K562	YBX3
chr19	6362044	6362134	+	intron-Distal,intron-Proximal	5.68763	11.50340	HepG2	PCBP2
chr19	6361658	6361721	+	CDS	4.01321	11.04556	K562	YBX3
chr19	6361877	6361939	+	5'-UTR,CDS,intron-Proximal	5.50866	9.01147	K562	METAP2
chr19	6361858	6361907	+	5'-UTR,CDS,intron-Proximal	6.01960	7.49422	HepG2	DDX3X
chr19	6364608	6364641	+	CDS,intron-Distal	3.91955	7.46470	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for CLPP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CLPP is not available on ENCORE database.
88 RBPs can affect the levels of CLPP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CLPP is not available on ENCORE database.

88 RBPs can affect the gene expression of CLPP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CLPP	ENSG00000125656.4	155.55720	415.64650	-1.41790	18.33470	17.07400	HepG2	TAF15
CLPP	ENSG00000125656.4	437.78190	184.23710	1.24850	18.26550	16.98420	HepG2	TRIM56
CLPP	ENSG00000125656.4	322.86830	166.96590	0.95130	9.84670	8.70570	HepG2	DNAJC2
CLPP	ENSG00000125656.4	541.46220	294.68890	0.87760	8.91860	7.33290	K562	TIA1
CLPP	ENSG00000125656.4	534.78980	329.57980	0.69820	8.18110	7.07770	HepG2	HNRNPL
CLPP	ENSG00000125656.4	1432.37140	1028.11440	0.47830	7.81580	6.93080	K562	AGGF1
CLPP	ENSG00000125656.4	845.13070	1229.17830	-0.54040	8.19890	6.85340	K562	SF3A3
CLPP	ENSG00000125656.4	512.69690	269.94760	0.92530	8.66900	6.66720	K562	SRSF4
CLPP	ENSG00000125656.4	806.19610	468.42410	0.78320	8.83990	6.65480	K562	CCAR1
CLPP	ENSG00000125656.4	223.45480	376.18820	-0.75150	6.99840	6.19270	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CLPP is not available on ENCORE database.

10 RBPs can affect the splicing of CLPP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	-0.06100	0.00000	0.00045	excluded	K562	AARS
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.08900	0.00000	0.00005	included	HepG2	RBM22
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.14900	0.00000	0.00000	included	K562	AQR
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.08700	0.00010	0.00200	included	HepG2	SF3A3
SE	CLPP	ENSG00000125656.4	chr19	+	6364462	6364642	6362456	6362553	6366268	6366374	0.10600	0.00013	0.03708	included	K562	SBDS
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.08800	0.00108	0.07103	included	HepG2	EFTUD2
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.06900	0.00111	0.01729	included	HepG2	PCBP1
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.07400	0.00467	0.04390	included	K562	EFTUD2
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.05600	0.00487	0.06694	included	HepG2	FUBP3
RI	CLPP	ENSG00000125656.4	chr19	+	6361879	6362553	6361879	6361951	6362456	6362553	0.06100	0.00689	0.05947	included	HepG2	U2AF1

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CLPP

General Information

Functions

Localization

Domains (AlphaFold: CLPP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CLPP is not avaliable on ENCORE database.

9 proteins are bound to CLPP RNA:

eCLIP assay for CLPP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CLPP is not available on ENCORE database.

88 RBPs can affect the gene expression of CLPP :

The Knockdown/knockout RNA-Seq assay for CLPP is not available on ENCORE database.

10 RBPs can affect the splicing of CLPP :

The Knockdown/knockout RNA-Seq assay for CLPP is not avaliable on ENCORE database.