CLMN

General Information

Gene Name       : CLMN
Gene ID             : ENSG00000165959.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLMN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLMNENSG00000165959.1115.3114.2914.80ENCSR000AEF
HepG2CLMNENSG00000165959.114.315.384.84ENCSR985KAT
K562CLMNENSG00000165959.110.070.050.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLMN is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLMN RNA is bound by 23 proteins.  







eCLIP assay for CLMN is not avaliable on ENCORE database.





23 proteins are bound to CLMN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149566019495660313-5'-UTR,CDS,intron-Distal,intron-Proximal3.0901417.41799HepG2U2AF2
chr149578610595786219-5'-UTR,CDS,intron-Distal,intron-Proximal5.169914.57565HepG2DDX3X
chr149565972295659789-5'-UTR,intron-Distal,intron-Proximal5.211885.96317HepG2EFTUD2
chr149566090395660929-CDS,intron-Distal3.077973.46866HepG2U2AF2
chr149567713195677213-CDS,intron-Distal,intron-Proximal3.220395.00751HepG2BCLAF1
chr149567074395670814-CDS,intron-Distal,intron-Proximal3.579886.57527HepG2U2AF2
chr149566991695669958-CDS,intron-Distal3.422593.27569HepG2BCLAF1
chr149566963295669720-CDS,intron-Distal3.787866.97808HepG2BCLAF1
chr149566975295669801-CDS,intron-Distal3.215664.26492HepG2BCLAF1
chr149578596295786067-CDS,intron-Distal3.278106.67352HepG2PRPF8
chr149568193095682011-CDS,intron-Distal,intron-Proximal5.269436.69228HepG2PRPF8
chr149577144595771483-intron-Distal3.767793.29248HepG2SUGP2
chr149572529795725342-intron-Distal5.3512814.39267HepG2AGGF1
chr149578585595785921-intron-Distal3.484796.83379HepG2CSTF2T
chr149572596195725966-intron-Distal5.187546.43973HepG2AGGF1
chr149578476995784838-intron-Distal3.644937.80345HepG2CSTF2T
chr149572566895725718-intron-Distal3.571543.68010HepG2GTF2F1
chr149572564895725752-intron-Distal4.7040314.30201HepG2HNRNPL
chr149572480995724929-intron-Distal4.9293317.37138HepG2AGGF1
chr149572431695724384-intron-Distal4.8650027.25722HepG2AGGF1
chr149571220095712267-intron-Distal4.495614.26705HepG2AGGF1
chr149566079895660831-intron-Distal,intron-Proximal5.0376831.20201HepG2U2AF2
chr149572439495724440-intron-Distal6.3675514.71445HepG2HNRNPL
chr149572434095724499-intron-Distal5.504229.11951HepG2CDC40
chr149578264595782699-intron-Distal3.717544.09469HepG2XPO5
chr149572453195724588-intron-Distal5.0893119.87753HepG2AGGF1
chr149567247395672522-intron-Distal3.823894.57751HepG2U2AF2
chr149572448495724533-intron-Distal6.8356716.91583HepG2HNRNPL
chr149572440095724531-intron-Distal4.8524437.25746HepG2AGGF1
chr149571416095714240-intron-Distal3.248375.19856HepG2PTBP1
chr149566355795663647-intron-Distal4.562394.74221HepG2PTBP1
chr149572557095725614-intron-Distal3.594443.15890HepG2GTF2F1
chr149572444595724484-intron-Distal5.6954913.02798HepG2HNRNPL
chr149566769595667793-intron-Distal4.133843.05187HepG2QKI
chr149577804295778110-intron-Distal4.104226.35159HepG2RBFOX2
chr149572425795724321-intron-Distal4.003493.45275HepG2LARP4
chr149572417995724211-intron-Distal4.527575.27767HepG2GTF2F1
chr149572568395725719-intron-Distal5.080766.29945HepG2XPO5
chr149567982295679897-intron-Distal,intron-Proximal4.940326.06765HepG2RBM5
chr149572430095724440-intron-Distal5.9620147.82126HepG2XPO5
chr149565841595658525-intron-Distal5.9995017.21285HepG2QKI
chr149572427795724393-intron-Distal4.7829310.82991HepG2GTF2F1
chr149571183195711876-intron-Distal4.315503.18269HepG2XPO5
chr149576437295764470-intron-Distal3.010736.44311HepG2CSTF2T
chr149575899395759054-intron-Distal3.678595.56645HepG2CSTF2T
chr149572552795725584-intron-Distal5.677087.96764HepG2XPO5
chr149575941795759469-intron-Distal4.251094.83336HepG2FAM120A
chr149566277095662820-intron-Distal,intron-Proximal4.252467.38067HepG2PRPF8
chr149572433995724394-intron-Distal5.1679523.50906HepG2HNRNPL
chr149572563795725750-intron-Distal3.766663.12870HepG2YBX3
chr149577492895775002-intron-Distal4.873157.92947HepG2CSTF2T
chr149571183595711929-intron-Distal4.128517.30217HepG2AGGF1
chr149572458995724698-intron-Distal5.2924626.21569HepG2AGGF1
chr149576084195760887-intron-Distal3.499084.35339HepG2CSTF2T
chr149572428495724436-intron-Distal4.271804.49340HepG2YBX3
chr149566080295660854-intron-Distal,intron-Proximal4.125756.96502HepG2SF3B4
chr149572425095724300-intron-Distal7.2345628.44694HepG2XPO5
chr149575769895757758-intron-Distal4.039333.65854HepG2RBFOX2
chr149576451595764559-intron-Distal3.163673.48399HepG2CSTF2T
chr149578548695785576-intron-Distal3.636447.41671HepG2FAM120A
chr149567730295677342-intron-Distal,intron-Proximal4.420754.77050HepG2SF3B4
chr149575942995759462-intron-Distal3.832793.19526HepG2CSTF2T
chr149576115895761204-intron-Distal3.277283.04847HepG2CSTF2T
chr149577062695770678-intron-Distal4.127733.79098HepG2SUGP2
chr149572417695724236-intron-Distal6.2727612.88832HepG2XPO5
chr149575996195760025-intron-Distal3.306067.33857HepG2CSTF2T
chr149572444095724506-intron-Distal6.2574114.88148HepG2XPO5
chr149565822895658269-intron-Distal3.883743.50006HepG2SF3B4
chr149573222795732349-intron-Distal5.137346.79824HepG2HNRNPM
chr149572431195724339-intron-Distal4.9120616.94347HepG2HNRNPL
chr149575872895758775-intron-Distal3.068356.02951HepG2FAM120A
chr149572446795724530-intron-Distal5.015096.11395HepG2GTF2F1
chr149566077095660798-intron-Distal,intron-Proximal4.9848130.35348HepG2U2AF2
chr149566076195660853-intron-Distal,intron-Proximal3.794618.42567HepG2U2AF1
chr149565807295658192-intron-Distal5.1804313.78156HepG2SF3B4
chr149572564995725753-intron-Distal5.8521023.53093HepG2AGGF1
chr149572565495725783-intron-Distal3.617904.63830HepG2LARP4
chr149576038895760429-intron-Distal4.195534.61649HepG2CSTF2T
chr149567564295675715-intron-Distal,intron-Proximal3.526315.22258HepG2TIAL1
chr149572453295724576-intron-Distal4.743317.92050HepG2XPO5
chr149572542895725494-intron-Distal4.9050311.77529HepG2AGGF1
chr149577367995773726-intron-Distal4.519833.97018HepG2HNRNPM
chr149572472395724770-intron-Distal6.0564412.55323HepG2AGGF1
chr149572535195725428-intron-Distal4.7866812.93569HepG2AGGF1
chr149577750895777563-intron-Distal3.131614.98353HepG2CSTF2T
chr149571172095711803-intron-Distal3.036455.62599HepG2AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLMN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLMN is not available on ENCORE database.

  • 118 RBPs can affect the levels of CLMN.  








The Knockdown/knockout RNA-Seq assay for CLMN is not available on ENCORE database.





118 RBPs can affect the gene expression of CLMN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLMNENSG00000165959.71510.474301189.219800.344902.526801.94120HepG2ACO1
CLMNENSG00000165959.71552.651701157.809200.423203.626102.50250HepG2ADAR
CLMNENSG00000165959.7688.866601188.41680-0.786707.454406.62590HepG2AKAP1
CLMNENSG00000165959.71362.094502394.51620-0.813903.880101.90170HepG2APOBEC3C
CLMNENSG00000165959.71264.49950983.313200.362702.441201.69870HepG2ASCC1
CLMNENSG00000165959.7755.248201378.91720-0.8685020.4606018.90600HepG2AUH
CLMNENSG00000165959.7597.10120835.62520-0.484902.942501.97240HepG2BCCIP
CLMNENSG00000165959.7210.70680977.26730-2.2135053.6462051.68380HepG2BOP1
CLMNENSG00000165959.71453.490601123.030000.372003.139301.82970HepG2BUD13
CLMNENSG00000165959.7918.204601401.27880-0.609908.401107.15940HepG2CALR
CLMNENSG00000165959.71380.62180934.215900.563405.350804.29320HepG2CIRBP
CLMNENSG00000165959.71630.004201189.191200.454806.008505.09750HepG2CKAP4
CLMNENSG00000165959.7457.840902563.99000-2.4855047.7756044.94330HepG2CNOT7
CLMNENSG00000165959.7475.46170897.18940-0.9161011.129509.85150HepG2CPSF6
CLMNENSG00000165959.71747.292101234.362800.501305.690004.14670HepG2CPSF7
CLMNENSG00000165959.71079.518901455.99160-0.431606.011005.13240HepG2CELF1
CLMNENSG00000165959.7794.649501565.57090-0.9783033.2829031.26470HepG2DAZAP1
CLMNENSG00000165959.71686.612501099.963600.616606.568105.36760HepG2DDX19B
CLMNENSG00000165959.71816.610201297.930300.484905.422804.50620HepG2DDX21
CLMNENSG00000165959.7342.55900622.39170-0.861507.813405.66690HepG2DDX28
CLMNENSG00000165959.7724.019701138.40930-0.652906.125105.22870HepG2DDX3X
CLMNENSG00000165959.71864.346003280.48860-0.8152010.273607.99380HepG2DDX47
CLMNENSG00000165959.71840.74060977.926600.912409.443408.37430HepG2DDX6
CLMNENSG00000165959.7663.337301165.82760-0.8135015.5959014.05070HepG2DNAJC21
CLMNENSG00000165959.7749.237301098.53550-0.552102.805301.68880HepG2EFTUD2
CLMNENSG00000165959.71564.81810940.095200.735008.406607.41140HepG2EIF2S1
CLMNENSG00000165959.71544.301701137.079600.441504.698303.19650HepG2EIF2S2
CLMNENSG00000165959.71655.152801225.991700.432904.961303.56450HepG2EIF3G
CLMNENSG00000165959.71387.609901038.911200.417402.821202.17570HepG2EIF4A3
CLMNENSG00000165959.71453.954801011.534500.523303.336202.58510HepG2EIF4B
CLMNENSG00000165959.7894.827101479.54750-0.725509.340307.87980HepG2EIF4G2
CLMNENSG00000165959.7713.608101162.28430-0.703807.299805.94650HepG2EWSR1
CLMNENSG00000165959.71260.858102238.61750-0.828205.673602.92820HepG2FASTKD1
CLMNENSG00000165959.7966.042101237.12240-0.356802.931601.75820HepG2FASTKD2
CLMNENSG00000165959.71184.73080687.887100.7842010.983809.46390HepG2FUBP3
CLMNENSG00000165959.71150.685301627.09640-0.499803.132901.94460HepG2FUS
CLMNENSG00000165959.71409.057301048.231600.426703.279202.52910HepG2FXR1
CLMNENSG00000165959.71503.398401032.316800.542205.136503.90970HepG2G3BP2
CLMNENSG00000165959.71973.912201017.047300.9566013.4652012.15440HepG2GPKOW
CLMNENSG00000165959.71544.013102168.57350-0.490103.210001.73970HepG2HNRNPA0
CLMNENSG00000165959.71555.016301176.997300.401703.644102.91690HepG2HNRNPA1
CLMNENSG00000165959.71764.379601438.793600.294203.555702.51400HepG2HNRNPA2B1
CLMNENSG00000165959.72866.335702117.594200.436703.046601.57240HepG2HNRNPAB
CLMNENSG00000165959.7707.169201309.21480-0.8886013.4360012.01600HepG2HNRNPC
CLMNENSG00000165959.71261.827202220.95060-0.815707.973505.52120HepG2HNRNPD
CLMNENSG00000165959.71476.317801156.172200.352503.934303.09500HepG2HNRNPF
CLMNENSG00000165959.71719.31210984.641000.8041011.6155010.27880HepG2HNRNPK
CLMNENSG00000165959.71961.225201426.122000.4596010.356009.12920HepG2HNRNPL
CLMNENSG00000165959.71852.34530970.585800.9323014.6311013.34020HepG2HNRNPLL
CLMNENSG00000165959.7605.108501044.29350-0.7873011.493609.79160HepG2HNRNPM
CLMNENSG00000165959.71051.090501300.55740-0.307203.546602.86860HepG2HNRNPU
CLMNENSG00000165959.71518.037002118.88770-0.481103.366602.00410HepG2HSPD1
CLMNENSG00000165959.71469.358301138.488800.368003.422902.62420HepG2IGF2BP1
CLMNENSG00000165959.7531.28760927.58270-0.804002.994701.97260HepG2IGF2BP3
CLMNENSG00000165959.7854.189801328.47240-0.6371011.4036010.02520HepG2ILF2
CLMNENSG00000165959.71505.415802499.68730-0.731606.114604.09010HepG2ILF3
CLMNENSG00000165959.71753.651802443.58370-0.478603.525002.15050HepG2KHDRBS1
CLMNENSG00000165959.71490.737701087.239000.455306.113304.62370HepG2KIF1C
CLMNENSG00000165959.7759.857801134.03680-0.577702.556401.46630HepG2LARP7
CLMNENSG00000165959.7807.520701054.46420-0.384902.257501.68380HepG2MATR3
CLMNENSG00000165959.7687.413401119.55890-0.703703.711902.49960HepG2METAP2
CLMNENSG00000165959.7954.791401224.91020-0.359403.295802.41630HepG2MSI2
CLMNENSG00000165959.71408.60790989.842500.508902.805901.83210HepG2MTPAP
CLMNENSG00000165959.71485.753701028.624500.530405.827204.07310HepG2NAA15
CLMNENSG00000165959.71955.582001079.300900.8574011.228109.99500HepG2NCBP2
CLMNENSG00000165959.71141.102102007.75200-0.815207.590205.28120HepG2NKRF
CLMNENSG00000165959.71092.834301552.41560-0.506407.185405.96740HepG2NOL12
CLMNENSG00000165959.71427.17080860.600300.729609.366808.05060HepG2NSUN2
CLMNENSG00000165959.7722.76560961.17950-0.411302.691601.97860HepG2PABPC4
CLMNENSG00000165959.7725.643501287.30050-0.8270015.5304013.80540HepG2PARN
CLMNENSG00000165959.71166.57210909.157300.359604.247003.52320HepG2PCBP1
CLMNENSG00000165959.73299.262101540.314801.0988012.6799010.70100HepG2PCBP2
CLMNENSG00000165959.71405.892202057.60800-0.549504.639002.29060HepG2PPIG
CLMNENSG00000165959.71746.478801043.894000.7424017.8594016.17780HepG2PRPF4
CLMNENSG00000165959.71650.03120633.785001.3803025.8991023.82430HepG2PRPF8
CLMNENSG00000165959.7692.70620925.10280-0.417404.858004.17640HepG2PTBP1
CLMNENSG00000165959.71315.022401573.10590-0.258503.516702.86380HepG2PUM1
CLMNENSG00000165959.7637.052101211.33120-0.9271011.2147010.11690HepG2PUS1
CLMNENSG00000165959.7407.742501323.29160-1.6984056.5013054.75320HepG2RBM22
CLMNENSG00000165959.71198.23410909.295600.398003.626102.86120HepG2RBM25
CLMNENSG00000165959.7641.224801367.40020-1.092506.479104.95340HepG2RBM27
CLMNENSG00000165959.71258.062201029.549600.289102.836702.29010HepG2NELFE
CLMNENSG00000165959.71639.60530958.887300.7738018.6910017.32710HepG2RECQL
CLMNENSG00000165959.7845.896501460.06210-0.787506.155604.78460HepG2RPS10
CLMNENSG00000165959.7667.683601040.70780-0.640303.864503.14900HepG2RPS19
CLMNENSG00000165959.7631.431201261.21760-0.998105.872504.73140HepG2RPS2
CLMNENSG00000165959.71154.516602575.07890-1.1573015.5147013.67960HepG2RPS3A
CLMNENSG00000165959.71030.21730626.943600.716406.381505.24300HepG2RRP9
CLMNENSG00000165959.71057.115301617.04500-0.613204.141302.24920HepG2RTF1
CLMNENSG00000165959.7947.716001158.19040-0.289303.195402.51340HepG2SAFB2
CLMNENSG00000165959.71545.287102424.87280-0.650005.951704.04140HepG2SART3
CLMNENSG00000165959.71507.590102445.97050-0.698204.987702.96150HepG2SBDS
CLMNENSG00000165959.73016.438701472.415701.034603.923603.11440HepG2SF3A3
CLMNENSG00000165959.72112.347701420.905800.5719015.4431014.03110HepG2SLBP
CLMNENSG00000165959.71167.727601350.62290-0.209902.263601.67250HepG2SMN1
CLMNENSG00000165959.71028.685001515.22100-0.558703.936102.77640HepG2SMNDC1
CLMNENSG00000165959.71269.364601494.58280-0.235601.984001.53840HepG2SRFBP1
CLMNENSG00000165959.71251.107701463.16170-0.225902.208101.64180HepG2SRSF5
CLMNENSG00000165959.7913.711801135.93830-0.314103.702102.91470HepG2SRSF7
CLMNENSG00000165959.72129.51880817.882301.3805066.9993065.03280HepG2SRSF9
CLMNENSG00000165959.71105.619801297.60570-0.231002.296001.81960HepG2SSB
CLMNENSG00000165959.7865.227601664.02560-0.9435030.8830029.18390HepG2SUCLG1
CLMNENSG00000165959.71744.33430903.623400.9488024.3581022.92230HepG2TAF15
CLMNENSG00000165959.7733.48870945.98560-0.367002.471901.78080HepG2TARDBP
CLMNENSG00000165959.71164.46010830.304200.487805.521204.35330HepG2TIA1
CLMNENSG00000165959.7922.450401492.48440-0.694205.292803.29990HepG2TRA2A
CLMNENSG00000165959.71767.025501275.036900.470708.211707.32270HepG2TRIM56
CLMNENSG00000165959.71088.771501447.75160-0.411104.159003.06130HepG2TUFM
CLMNENSG00000165959.7809.996401294.81030-0.676807.725806.68030HepG2U2AF1
CLMNENSG00000165959.71166.617801532.41430-0.393502.623901.80820HepG2UBE2L3
CLMNENSG00000165959.7320.67230483.14660-0.591403.927403.02280HepG2UCHL5
CLMNENSG00000165959.71099.411101342.20660-0.287902.634401.60660HepG2UTP18
CLMNENSG00000165959.7806.284701260.70760-0.6449011.9315010.82360HepG2UTP3
CLMNENSG00000165959.7837.089102306.52920-1.4623022.2099019.25970HepG2XPO5
CLMNENSG00000165959.7732.658001634.70170-1.1578013.5632011.43130HepG2XRCC6
CLMNENSG00000165959.71106.32100805.115800.458403.350802.55810HepG2XRN2
CLMNENSG00000165959.71006.439001436.13930-0.5129010.761509.85850HepG2ZNF622
CLMNENSG00000165959.71007.496301485.01050-0.559703.986002.39930HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLMN is not available on ENCORE database.





3 RBPs can affect the splicing of CLMN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLMNENSG00000165959.7chr14-9566055195660798956601859566025695660872956609330.571000.000000.00026includedHepG2HNRNPU
RICLMNENSG00000165959.7chr14-956601859566093395660185956602569566087295660933-0.398000.002090.04522excludedHepG2SRSF1
MXECLMNENSG00000165959.7chr14-9566055195660798956608729566093395660185956602569566283495663031-0.143000.002370.093902includedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLMN is not avaliable on ENCORE database.