CHMP2B

General Information

Gene Name       : CHMP2B
Gene ID             : ENSG00000083937.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHMP2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHMP2BENSG00000083937.821.8618.1820.02ENCSR000AEF
HepG2CHMP2BENSG00000083937.811.1621.1216.14ENCSR985KAT
K562CHMP2BENSG00000083937.89.649.649.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHMP2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHMP2B RNA is bound by 2 proteins.  







eCLIP assay for CHMP2B is not avaliable on ENCORE database.





2 proteins are bound to CHMP2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr38729902387299126+CDS,intron-Proximal4.187843.71570HepG2BCLAF1
chr38728032687280378+intron-Distal3.873543.29248HepG2SUGP2
chr38728235487282429+intron-Distal3.992413.86809HepG2SUGP2
chr38728060587280663+intron-Distal4.187553.29248HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHMP2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHMP2B is not available on ENCORE database.

  • 72 RBPs can affect the levels of CHMP2B.  








The Knockdown/knockout RNA-Seq assay for CHMP2B is not available on ENCORE database.





72 RBPs can affect the gene expression of CHMP2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHMP2BENSG00000083937.4221.36290363.64850-0.716104.901803.51470HepG2AATF
CHMP2BENSG00000083937.41399.08250972.324200.524903.941503.32380HepG2AKAP1
CHMP2BENSG00000083937.4192.38680573.61530-1.5761022.7322021.28050HepG2BOP1
CHMP2BENSG00000083937.4897.77840536.813600.741809.749608.43340HepG2CALR
CHMP2BENSG00000083937.4576.90260334.268900.787204.542903.55960HepG2CNOT7
CHMP2BENSG00000083937.4760.14810401.485400.9208011.246009.98810HepG2DDX21
CHMP2BENSG00000083937.41408.94990931.477400.596905.615404.75320HepG2DDX3X
CHMP2BENSG00000083937.4666.03690478.542800.476902.687702.01910HepG2DKC1
CHMP2BENSG00000083937.4346.61830425.60630-0.296201.889501.33220HepG2DNAJC2
CHMP2BENSG00000083937.4886.18930682.571500.376502.384301.62660HepG2EIF4G2
CHMP2BENSG00000083937.41070.89580873.231300.294302.522401.94420HepG2ETF1
CHMP2BENSG00000083937.4717.99530511.677300.488602.574701.82940HepG2FIP1L1
CHMP2BENSG00000083937.4293.29980420.94960-0.521303.082502.25590HepG2FUBP3
CHMP2BENSG00000083937.4383.44800857.54270-1.1612015.1072013.62760HepG2FXR1
CHMP2BENSG00000083937.4526.20680795.61250-0.596403.403202.66870HepG2G3BP1
CHMP2BENSG00000083937.4347.22450520.91010-0.585203.672302.85590HepG2HNRNPF
CHMP2BENSG00000083937.4568.94790805.35910-0.501303.767402.96200HepG2HNRNPK
CHMP2BENSG00000083937.4520.18720658.01260-0.339103.263502.53640HepG2HNRNPL
CHMP2BENSG00000083937.4911.95550569.724200.678606.546605.62390HepG2HNRNPLL
CHMP2BENSG00000083937.4533.88860369.845300.529502.883001.62200HepG2HSPD1
CHMP2BENSG00000083937.4370.28530512.95190-0.470202.312801.64920HepG2IGF2BP1
CHMP2BENSG00000083937.4636.96910414.107400.621105.440904.33940HepG2MSI2
CHMP2BENSG00000083937.4460.43960716.24880-0.637407.268706.04530HepG2NOL12
CHMP2BENSG00000083937.4385.49860505.14610-0.390001.989501.35010HepG2NSUN2
CHMP2BENSG00000083937.4281.40240456.19600-0.697003.874602.65140HepG2PCBP2
CHMP2BENSG00000083937.4193.54900285.22900-0.559403.039701.74870HepG2PKM
CHMP2BENSG00000083937.4211.61110355.84890-0.749806.440105.31520HepG2PRPF4
CHMP2BENSG00000083937.4914.31350683.693500.419203.203702.56860HepG2PUF60
CHMP2BENSG00000083937.4713.41560509.455700.485704.693103.93130HepG2PUS1
CHMP2BENSG00000083937.4669.10360440.245800.603802.740102.03830HepG2RAVER1
CHMP2BENSG00000083937.41106.91000729.866200.600708.737207.93590HepG2RBM22
CHMP2BENSG00000083937.4611.84530438.806300.479502.905101.81690HepG2RCC2
CHMP2BENSG00000083937.4587.05960777.38730-0.405104.008903.28490HepG2RECQL
CHMP2BENSG00000083937.4417.83650561.08550-0.425302.464401.81390HepG2RPLP0
CHMP2BENSG00000083937.4505.91820335.295900.593402.959602.13360HepG2RPS3A
CHMP2BENSG00000083937.4235.52460398.87460-0.760103.723002.82840HepG2RRP9
CHMP2BENSG00000083937.4883.87830560.704400.656504.858303.94920HepG2SF3A3
CHMP2BENSG00000083937.4658.96320448.851300.553903.219402.17710HepG2SMNDC1
CHMP2BENSG00000083937.4229.71330664.86010-1.533204.011002.36260HepG2SNRNP200
CHMP2BENSG00000083937.4441.86010627.46760-0.506002.282901.57600HepG2SNRNP70
CHMP2BENSG00000083937.42164.62110824.368301.3927067.0292065.40950HepG2SRFBP1
CHMP2BENSG00000083937.41407.80570815.094800.7883017.5473016.57150HepG2SRSF1
CHMP2BENSG00000083937.4996.54120606.741100.715705.645304.17220HepG2SRSF3
CHMP2BENSG00000083937.4620.91880411.418600.593703.078301.80670HepG2SUB1
CHMP2BENSG00000083937.4446.70720345.499800.370502.347901.47650HepG2SUPT6H
CHMP2BENSG00000083937.4465.30620732.57330-0.654808.047707.17170HepG2TAF15
CHMP2BENSG00000083937.41042.49510437.700601.2519019.1798017.47440HepG2U2AF1
CHMP2BENSG00000083937.4653.38140497.257800.393803.650902.86520HepG2UPF1
CHMP2BENSG00000083937.4459.72150300.305300.614203.030201.87660HepG2XPO5
CHMP2BENSG00000083937.4947.27210546.890200.7924017.0037015.93460HepG2ZNF622
CHMP2BENSG00000083937.4609.86260474.918400.360702.213001.62710K562AKAP8L
CHMP2BENSG00000083937.4233.22590332.73740-0.512702.462401.64240K562BOP1
CHMP2BENSG00000083937.4258.42860353.79680-0.453202.441701.70110K562CPSF6
CHMP2BENSG00000083937.4572.84170366.732100.643303.559702.73370K562G3BP2
CHMP2BENSG00000083937.4182.56400293.71650-0.686004.179001.65230K562GRWD1
CHMP2BENSG00000083937.4159.05750337.97160-1.087408.930807.90920K562HNRNPC
CHMP2BENSG00000083937.4205.28470301.79040-0.555902.797701.64860K562HNRNPF
CHMP2BENSG00000083937.4651.31980504.011800.369802.303601.55940K562KIF1C
CHMP2BENSG00000083937.4354.09330478.86140-0.435502.893101.94740K562MATR3
CHMP2BENSG00000083937.4754.24920564.619900.417703.088802.11890K562MBNL1
CHMP2BENSG00000083937.4298.05390415.62030-0.479703.442402.54450K562MTPAP
CHMP2BENSG00000083937.4593.13020395.757200.583603.304002.32350K562NAA15
CHMP2BENSG00000083937.4325.94890461.78180-0.502602.898802.13750K562NSUN2
CHMP2BENSG00000083937.4225.86720426.93150-0.918508.105006.40000K562PCBP2
CHMP2BENSG00000083937.4221.89300329.95090-0.572403.011801.51570K562PHF6
CHMP2BENSG00000083937.4360.94740247.806100.542502.950302.17740K562PRPF8
CHMP2BENSG00000083937.4200.84640303.02170-0.593303.097402.13400K562PSIP1
CHMP2BENSG00000083937.41157.62770810.267500.514604.254503.24880K562PUF60
CHMP2BENSG00000083937.41192.27480470.998401.3398023.7107022.13380K562PUS1
CHMP2BENSG00000083937.4572.41120458.909000.318702.011101.49080K562RBM15
CHMP2BENSG00000083937.4185.53410276.44310-0.575302.985501.95420K562RCC2
CHMP2BENSG00000083937.4484.72600381.502200.345402.159401.40460K562SF3B4
CHMP2BENSG00000083937.4289.56460563.71030-0.961104.313202.54200K562SFPQ
CHMP2BENSG00000083937.4148.50890262.06330-0.819404.598103.18040K562SRFBP1
CHMP2BENSG00000083937.4142.55170225.76660-0.663303.005201.89620K562SRSF4
CHMP2BENSG00000083937.4325.83570497.74190-0.611304.117702.53600K562STAU1
CHMP2BENSG00000083937.4174.41760291.45920-0.740703.994002.85480K562TIAL1
CHMP2BENSG00000083937.4166.21230309.60990-0.897406.092704.56660K562TRIM56
CHMP2BENSG00000083937.4506.23900367.267300.462903.433102.54050K562U2AF2
CHMP2BENSG00000083937.4556.45660721.91320-0.375602.585701.75690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHMP2B is not available on ENCORE database.





5 RBPs can affect the splicing of CHMP2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHMP2BENSG00000083937.4chr3+872894728728960387276458872767068728984887289940-0.171000.001620.03079excludedK562SRSF1
SECHMP2BENSG00000083937.4chr3+8728947287289603872764588727670687289848872899400.555000.000000.00002includedK562XRCC6
SECHMP2BENSG00000083937.4chr3+8728947287289603872764588727670687289848872899400.185000.000710.00916includedK562AQR
SECHMP2BENSG00000083937.4chr3+872898488728994087276451872767068729486387294968-0.151000.000060.00104excludedK562AQR
SECHMP2BENSG00000083937.4chr3+8728947287289603872764588727670687289848872899400.153000.000010.00449includedK562NPM1
SECHMP2BENSG00000083937.4chr3+8728947287289603872764588727670687289848872899400.643000.000000.00019includedK562HNRNPC
A3SSCHMP2BENSG00000083937.4chr3+8728982687289940872898488728994087276451872767060.195000.000280.00224longerK562AQR
A3SSCHMP2BENSG00000083937.4chr3+8730252087302620873025538730262087298879872991270.157000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHMP2B is not avaliable on ENCORE database.