CDK17

General Information

Gene Name : CDK17
Gene ID : ENSG00000059758.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDK17)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDK17	ENSG00000059758.7	32.61	17.17	24.89	ENCSR000AEF
HepG2	CDK17	ENSG00000059758.7	7.16	9.47	8.32	ENCSR985KAT
K562	CDK17	ENSG00000059758.7	20.05	23.63	21.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDK17 is not avaliable on ENCORE database.

Proteins bound to RNA

CDK17 RNA is bound by 29 proteins.

CanvasJS.com

eCLIP assay for CDK17 is not avaliable on ENCORE database.

29 proteins are bound to CDK17 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	96741265	96741361	-	intron-Distal	6.22982	19.36052	HepG2	PCBP2
chr12	96703809	96703927	-	intron-Distal	5.07311	15.54337	K562	KHSRP
chr12	96717913	96717989	-	intron-Distal,intron-Proximal	4.73670	15.12840	K562	AQR
chr12	96728438	96728497	-	intron-Distal,intron-Proximal	6.38148	13.72936	K562	AQR
chr12	96793237	96793341	-	intron-Distal,intron-Proximal	5.48049	13.05195	HepG2	PRPF4
chr12	96707159	96707227	-	CDS,intron-Distal,intron-Proximal	5.80062	12.19672	HepG2	BCLAF1
chr12	96793155	96793237	-	5'-UTR,intron-Distal,intron-Proximal	4.71702	11.91013	K562	GTF2F1
chr12	96685695	96685794	-	intron-Distal	4.07770	11.86409	K562	PTBP1
chr12	96776446	96776505	-	intron-Distal	4.23948	11.23387	K562	EXOSC5
chr12	96776761	96776830	-	intron-Distal	5.52483	11.00212	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 93 entries

eCLIP assay for CDK17 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDK17 is not available on ENCORE database.
58 RBPs can affect the levels of CDK17.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDK17 is not available on ENCORE database.

58 RBPs can affect the gene expression of CDK17 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDK17	ENSG00000059758.3	1897.33680	1028.72460	0.88300	13.69680	12.53490	K562	PUS1
CDK17	ENSG00000059758.3	405.34490	742.63350	-0.87350	13.12540	12.04010	HepG2	TAF15
CDK17	ENSG00000059758.3	1315.28160	864.64610	0.60510	11.92710	11.08070	HepG2	SRFBP1
CDK17	ENSG00000059758.3	499.21730	846.14320	-0.76120	11.46730	10.51040	HepG2	NELFE
CDK17	ENSG00000059758.3	178.03990	407.38580	-1.19420	11.06670	9.63280	HepG2	XRN2
CDK17	ENSG00000059758.3	1532.22290	1002.29390	0.61220	10.01440	8.91290	K562	RBM15
CDK17	ENSG00000059758.3	253.24460	474.62930	-0.90630	8.28960	7.25750	HepG2	HNRNPA1
CDK17	ENSG00000059758.3	358.08310	685.39380	-0.93660	9.06970	7.20380	K562	HNRNPM
CDK17	ENSG00000059758.3	340.98420	514.15720	-0.59250	6.16710	5.38510	HepG2	TRIM56
CDK17	ENSG00000059758.3	1350.02510	996.84490	0.43740	6.15620	5.36130	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 64 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDK17 is not available on ENCORE database.

3 RBPs can affect the splicing of CDK17 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	CDK17	ENSG00000059758.3	chr12	-	96688776	96688900	96691047	96691110	96683035	96683065	96691404	96691499	-0.19800	0.00021	0.01180	2included	K562	AGGF1
MXE	CDK17	ENSG00000059758.3	chr12	-	96688767	96688900	96691047	96691110	96683035	96683065	96691404	96691499	-0.16500	0.00183	0.05670	2included	K562	AGGF1
SE	CDK17	ENSG00000059758.3	chr12	-	96691047	96691110			96688776	96688900	96691404	96691499	-0.15700	0.00320	0.09631	excluded	K562	SF3B1
SE	CDK17	ENSG00000059758.3	chr12	-	96691047	96691110			96688776	96688900	96691404	96691499	-0.09600	0.00439	0.08402	excluded	K562	AGGF1
SE	CDK17	ENSG00000059758.3	chr12	-	96692646	96692761			96691404	96691499	96694081	96694138	-0.08100	0.00798	0.06784	excluded	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDK17

General Information

Functions

Localization

Domains (AlphaFold: CDK17)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDK17 is not avaliable on ENCORE database.

29 proteins are bound to CDK17 RNA:

eCLIP assay for CDK17 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDK17 is not available on ENCORE database.

58 RBPs can affect the gene expression of CDK17 :

The Knockdown/knockout RNA-Seq assay for CDK17 is not available on ENCORE database.

3 RBPs can affect the splicing of CDK17 :

The Knockdown/knockout RNA-Seq assay for CDK17 is not avaliable on ENCORE database.