C2orf88

General Information

Gene Name       : C2orf88
Gene ID             : ENSG00000187699.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C2orf88)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C2orf88ENSG00000187699.101.461.631.54ENCSR000AEF
HepG2C2orf88ENSG00000187699.101.232.051.64ENCSR985KAT
K562C2orf88ENSG00000187699.1034.5528.3831.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C2orf88 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C2orf88 RNA is bound by 7 proteins.  







eCLIP assay for C2orf88 is not avaliable on ENCORE database.





7 proteins are bound to C2orf88 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2191066568191066614+3'-UTR3.119663.29600K562LIN28B
chr2191066539191066568+3'-UTR3.850833.30425K562LIN28B
chr2191064573191064598+3'-UTR,CDS3.096653.69775K562YBX3
chr2191065282191065372+3'-UTR3.885085.53799K562FAM120A
chr2191066818191066877+3'-UTR4.482619.43510K562UPF1
chr2191065276191065336+3'-UTR3.325454.44982K562UPF1
chr2191066834191066895+3'-UTR3.480893.68457K562LIN28B
chr2191066770191066818+3'-UTR5.100466.02674K562UPF1
chr2191045648191045700+5'-UTR,intron-Distal4.026405.07098K562DDX3X
chr2191045597191045648+5'-UTR,intron-Distal3.448993.33524K562DDX3X
chr2191064679191064720+CDS3.719139.98187K562YBX3
chr2190758384190758389+intron-Distal4.829884.99795K562QKI
chr2190758389190758409+intron-Distal4.829884.99795K562QKI
chr2191059207191059319+intron-Distal3.647454.48570K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C2orf88 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C2orf88 is not available on ENCORE database.

  • 80 RBPs can affect the levels of C2orf88.  








The Knockdown/knockout RNA-Seq assay for C2orf88 is not available on ENCORE database.





80 RBPs can affect the gene expression of C2orf88 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C2orf88ENSG00000187699.631.7885066.75880-1.070502.677502.00160HepG2AUH
C2orf88ENSG00000187699.629.5439060.16760-1.026102.133801.60330HepG2BOP1
C2orf88ENSG00000187699.670.0583035.795600.968702.185301.39910HepG2G3BP2
C2orf88ENSG00000187699.648.0828018.955401.342802.628301.75750HepG2GEMIN5
C2orf88ENSG00000187699.681.2774032.164701.337302.355701.45500HepG2IGF2BP3
C2orf88ENSG00000187699.6193.9093081.364601.252806.309005.04390HepG2LARP4
C2orf88ENSG00000187699.674.5875036.362601.036402.518601.89060HepG2MAGOH
C2orf88ENSG00000187699.6135.7619036.569101.892303.722003.00010HepG2MATR3
C2orf88ENSG00000187699.649.0846015.910901.625203.533201.72500HepG2PA2G4
C2orf88ENSG00000187699.686.0938052.176600.722402.123001.59130HepG2PUF60
C2orf88ENSG00000187699.688.3411055.351900.674401.992801.41770HepG2PUM2
C2orf88ENSG00000187699.68.6672037.91730-2.129203.915403.18970HepG2QKI
C2orf88ENSG00000187699.699.6264064.054800.637101.844801.39960HepG2RBM22
C2orf88ENSG00000187699.668.4674020.720601.724304.829404.04310HepG2RPS19
C2orf88ENSG00000187699.680.5387036.481801.142402.924502.10360HepG2RPS2
C2orf88ENSG00000187699.622.4270046.63150-1.056101.884201.32530HepG2SF3A3
C2orf88ENSG00000187699.6179.9482072.352701.314408.968008.20740HepG2SRFBP1
C2orf88ENSG00000187699.6100.1232038.044701.395905.062204.47270HepG2SRSF1
C2orf88ENSG00000187699.6118.9823062.828300.921203.842603.26060HepG2SSB
C2orf88ENSG00000187699.656.4388022.440901.330502.505701.48650HepG2TBRG4
C2orf88ENSG00000187699.666.4955031.534901.076202.742902.24400HepG2TIAL1
C2orf88ENSG00000187699.61333.266501002.761800.410903.796502.38830K562AARS
C2orf88ENSG00000187699.61118.385101820.22610-0.7027012.1073011.01360K562AGGF1
C2orf88ENSG00000187699.61158.882701893.98020-0.7087010.725409.32730K562AKAP8L
C2orf88ENSG00000187699.6687.558002613.16140-1.9262062.8310060.39110K562AQR
C2orf88ENSG00000187699.6885.197701174.53240-0.408004.566102.80680K562BCCIP
C2orf88ENSG00000187699.6926.037501134.98010-0.293502.898001.91690K562BCLAF1
C2orf88ENSG00000187699.6992.941901344.71120-0.437502.496401.67010K562BOP1
C2orf88ENSG00000187699.61365.210702204.30430-0.6912016.3078013.74190K562CPEB4
C2orf88ENSG00000187699.6514.574001429.88120-1.4744017.3024015.31900K562CPSF6
C2orf88ENSG00000187699.6636.64340861.05150-0.435603.967502.67040K562CSTF2
C2orf88ENSG00000187699.63249.178902280.677400.5105012.1282010.86990K562DDX47
C2orf88ENSG00000187699.6656.86650938.21870-0.514304.322903.16390K562EFTUD2
C2orf88ENSG00000187699.6993.082401687.16110-0.7646017.2666015.69570K562EIF2S2
C2orf88ENSG00000187699.6646.997401048.86590-0.697008.583407.13730K562EIF4A3
C2orf88ENSG00000187699.62413.696602869.77390-0.249702.461301.57070K562EIF4G2
C2orf88ENSG00000187699.6879.750501208.99910-0.458604.823603.10330K562EXOSC5
C2orf88ENSG00000187699.61375.76040952.366800.530504.761303.21560K562FKBP4
C2orf88ENSG00000187699.6923.451801454.73980-0.655705.851004.59740K562FMR1
C2orf88ENSG00000187699.6837.509201232.96660-0.558004.416903.23820K562FTO
C2orf88ENSG00000187699.61691.959601118.425700.597104.690203.71470K562G3BP2
C2orf88ENSG00000187699.6951.118001365.23860-0.521503.960203.01530K562GPKOW
C2orf88ENSG00000187699.61368.137302248.35040-0.7167011.571309.99930K562GRSF1
C2orf88ENSG00000187699.6802.336201317.61290-0.7156010.947609.01070K562HNRNPA1
C2orf88ENSG00000187699.6898.707301097.54990-0.288401.956101.44290K562HNRNPC
C2orf88ENSG00000187699.6684.61690979.96940-0.517404.906403.32790K562HNRNPF
C2orf88ENSG00000187699.61588.132702061.17630-0.376103.896502.61500K562HNRNPL
C2orf88ENSG00000187699.61123.123701459.15070-0.377604.397303.26070K562HNRNPU
C2orf88ENSG00000187699.61001.948701475.43070-0.558304.491103.05420K562IGF2BP2
C2orf88ENSG00000187699.61573.896802010.15300-0.353003.570602.61960K562KIF1C
C2orf88ENSG00000187699.6624.159301165.60220-0.901108.604406.84220K562KRR1
C2orf88ENSG00000187699.61216.129801550.87640-0.350803.231102.31580K562MAGOH
C2orf88ENSG00000187699.6957.336401332.60250-0.477103.522102.52740K562METAP2
C2orf88ENSG00000187699.61160.145101615.56130-0.477708.323606.99110K562MTPAP
C2orf88ENSG00000187699.61243.089901794.91750-0.5300013.3416011.87660K562NSUN2
C2orf88ENSG00000187699.6798.773901592.75820-0.995706.272804.60180K562PABPN1
C2orf88ENSG00000187699.6914.080601379.94280-0.594207.015405.43240K562PCBP2
C2orf88ENSG00000187699.61455.079301179.600300.302702.710501.91890K562POLR2G
C2orf88ENSG00000187699.61453.888501868.93430-0.362302.960602.10800K562PPIG
C2orf88ENSG00000187699.6782.573701506.75440-0.9451019.2639017.58520K562PTBP1
C2orf88ENSG00000187699.62541.509803263.27780-0.360605.005203.69960K562PUM2
C2orf88ENSG00000187699.6746.089401878.64890-1.3323027.6171025.88780K562PUS1
C2orf88ENSG00000187699.61845.014201067.218200.789705.704103.55800K562RAVER1
C2orf88ENSG00000187699.6866.933101444.93770-0.7370010.262708.48530K562RBM22
C2orf88ENSG00000187699.6631.62940897.60530-0.507004.984103.65050K562RCC2
C2orf88ENSG00000187699.6846.919701136.24810-0.424003.653201.68000K562RECQL
C2orf88ENSG00000187699.61230.22790703.717000.805809.309807.34350K562RPS3
C2orf88ENSG00000187699.61262.920401769.00660-0.486203.377301.31960K562SAFB2
C2orf88ENSG00000187699.61301.500002025.85820-0.638404.103202.15510K562SBDS
C2orf88ENSG00000187699.61434.767301086.626700.400903.471501.83230K562SDAD1
C2orf88ENSG00000187699.6823.720101456.57870-0.822403.448702.06660K562SF1
C2orf88ENSG00000187699.61165.873101771.29830-0.6034011.466009.89670K562SF3A3
C2orf88ENSG00000187699.6854.814101298.19410-0.602805.080003.74020K562SF3B1
C2orf88ENSG00000187699.6906.956401163.44310-0.359303.364102.41960K562SF3B4
C2orf88ENSG00000187699.61158.772001775.67430-0.615802.527301.30200K562SFPQ
C2orf88ENSG00000187699.6758.311301477.09280-0.9619018.9112017.07930K562SRSF1
C2orf88ENSG00000187699.61075.379101394.93160-0.375303.125301.99840K562SRSF5
C2orf88ENSG00000187699.6845.692101102.99830-0.383204.159202.70470K562SRSF7
C2orf88ENSG00000187699.61715.939701342.695500.353803.906902.09390K562SRSF9
C2orf88ENSG00000187699.6678.78050883.89720-0.380902.262201.34910K562SUPV3L1
C2orf88ENSG00000187699.6600.06820946.49410-0.657503.353502.31850K562TIAL1
C2orf88ENSG00000187699.6746.750501005.31210-0.428903.505902.41720K562TRIM56
C2orf88ENSG00000187699.62792.239903529.97250-0.338203.219801.69790K562UBE2L3
C2orf88ENSG00000187699.61246.736401903.19830-0.6103014.2588012.78160K562UPF1
C2orf88ENSG00000187699.61057.882501398.58910-0.402804.034901.98910K562UPF2
C2orf88ENSG00000187699.61234.813501904.41000-0.625103.277201.83260K562UTP18
C2orf88ENSG00000187699.61028.204901628.49160-0.663409.963208.26440K562WDR3
C2orf88ENSG00000187699.62022.144902943.89640-0.541807.438705.90570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C2orf88 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C2orf88 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C2orf88 is not avaliable on ENCORE database.