BCKDHA

General Information

Gene Name : BCKDHA
Gene ID : ENSG00000248098.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BCKDHA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BCKDHA	ENSG00000248098.11	8.66	28.22	18.44	ENCSR000AEF
HepG2	BCKDHA	ENSG00000248098.11	6.92	3.40	5.16	ENCSR985KAT
K562	BCKDHA	ENSG00000248098.11	20.83	16.16	18.49	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BCKDHA is not avaliable on ENCORE database.

Proteins bound to RNA

BCKDHA RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for BCKDHA is not avaliable on ENCORE database.

13 proteins are bound to BCKDHA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	41930810	41930872	+	3'-UTR	5.19324	8.52455	K562	PABPC4
chr19	41889739	41889805	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34438	8.29266	K562	AQR
chr19	41889542	41889650	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.98670	8.25772	K562	LSM11
chr19	41916866	41916914	+	CDS,intron-Distal	3.93439	8.08045	K562	YBX3
chr19	41930619	41930668	+	3'-UTR,CDS	4.64908	7.71026	K562	PABPC4
chr19	41928204	41928249	+	CDS	3.82459	7.40140	K562	YBX3
chr19	41916628	41916658	+	CDS	3.43697	7.18470	K562	YBX3
chr19	41916658	41916676	+	CDS	3.16487	6.98725	K562	YBX3
chr19	41929084	41929163	+	intron-Proximal	5.29256	6.75320	K562	AQR
chr19	41884166	41884246	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.84701	6.53595	K562	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 22 entries

eCLIP assay for BCKDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BCKDHA is not available on ENCORE database.
96 RBPs can affect the levels of BCKDHA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.

96 RBPs can affect the gene expression of BCKDHA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BCKDHA	ENSG00000248098.6	64.47350	825.25430	-3.67810	101.85140	99.12030	HepG2	PCBP1
BCKDHA	ENSG00000248098.6	185.47300	820.28860	-2.14490	58.58070	56.42400	HepG2	TAF15
BCKDHA	ENSG00000248098.6	259.54260	912.54100	-1.81390	52.47110	50.98430	HepG2	SRSF1
BCKDHA	ENSG00000248098.6	187.13050	825.37550	-2.14100	50.96580	48.40540	HepG2	RBM25
BCKDHA	ENSG00000248098.6	289.85760	874.24160	-1.59270	40.72960	38.96920	HepG2	SF3B4
BCKDHA	ENSG00000248098.6	472.70600	1318.80940	-1.48020	32.41290	29.62730	K562	PUF60
BCKDHA	ENSG00000248098.6	138.46850	547.27310	-1.98270	30.53750	29.25070	HepG2	SSB
BCKDHA	ENSG00000248098.6	353.65580	870.44620	-1.29940	29.47120	27.84450	HepG2	RECQL
BCKDHA	ENSG00000248098.6	367.56180	757.40430	-1.04310	18.29630	16.85000	K562	FXR1
BCKDHA	ENSG00000248098.6	953.56400	545.15440	0.80660	17.68600	16.11720	HepG2	HNRNPL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.

8 RBPs can affect the splicing of BCKDHA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.15700	0.00000	0.00001	included	HepG2	TIAL1
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.13400	0.00001	0.00012	included	HepG2	U2AF2
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.06300	0.00002	0.00080	included	K562	RBM22
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.07300	0.00007	0.00827	included	HepG2	TBRG4
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.06700	0.00008	0.00826	included	HepG2	LARP4
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.17000	0.00010	0.00246	included	HepG2	PCBP1
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.11200	0.00229	0.02352	included	HepG2	U2AF1
RI	BCKDHA	ENSG00000248098.6	chr19	+	41916541	41916914	41916541	41916721	41916827	41916914	0.07400	0.00549	0.05749	included	HepG2	PRPF8

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BCKDHA

General Information

Functions

Localization

Domains (AlphaFold: BCKDHA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BCKDHA is not avaliable on ENCORE database.

13 proteins are bound to BCKDHA RNA:

eCLIP assay for BCKDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.

96 RBPs can affect the gene expression of BCKDHA :

The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.

8 RBPs can affect the splicing of BCKDHA :

The Knockdown/knockout RNA-Seq assay for BCKDHA is not avaliable on ENCORE database.