ATP2A3

General Information

Gene Name : ATP2A3
Gene ID : ENSG00000074370.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATP2A3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATP2A3	ENSG00000074370.17	7.32	18.01	12.67	ENCSR000AEF
HepG2	ATP2A3	ENSG00000074370.17	0.15	0.08	0.11	ENCSR985KAT
K562	ATP2A3	ENSG00000074370.17	46.99	21.08	34.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATP2A3 is not avaliable on ENCORE database.

Proteins bound to RNA

ATP2A3 RNA is bound by 22 proteins.

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eCLIP assay for ATP2A3 is not avaliable on ENCORE database.

22 proteins are bound to ATP2A3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	3839967	3840025	-	intron-Distal	5.40524	33.48484	K562	EIF4G2
chr17	3840309	3840381	-	intron-Distal	5.05871	31.50394	K562	TARDBP
chr17	3840137	3840214	-	intron-Distal	6.07475	26.98721	K562	EIF4G2
chr17	3828011	3828114	-	3'-UTR,CDS,intron-Distal	6.19108	26.59129	K562	UPF1
chr17	3839784	3839903	-	intron-Distal,intron-Proximal	4.68819	24.97058	K562	EIF4G2
chr17	3840172	3840196	-	intron-Distal	6.50250	22.99716	K562	TARDBP
chr17	3840025	3840059	-	intron-Distal	6.96293	22.69658	K562	EIF4G2
chr17	3828398	3828554	-	3'-UTR,intron-Distal,intron-Proximal	4.51604	22.25764	K562	UPF1
chr17	3840258	3840309	-	intron-Distal	6.44387	22.18212	K562	TARDBP
chr17	3839963	3840035	-	intron-Distal	5.61364	21.95813	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 105 entries

eCLIP assay for ATP2A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATP2A3 is not available on ENCORE database.
106 RBPs can affect the levels of ATP2A3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.

106 RBPs can affect the gene expression of ATP2A3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATP2A3	ENSG00000074370.13	7552.79230	1462.81220	2.36820	149.31860	146.33860	K562	EIF2S2
ATP2A3	ENSG00000074370.13	395.73350	2746.44410	-2.79500	115.04790	111.89120	K562	AQR
ATP2A3	ENSG00000074370.13	863.22420	2553.59550	-1.56470	86.08990	82.91490	K562	MTPAP
ATP2A3	ENSG00000074370.13	818.38660	2467.11260	-1.59200	79.38240	76.49820	K562	DDX47
ATP2A3	ENSG00000074370.13	309.78190	1514.13970	-2.28920	76.29330	73.12480	K562	POLR2G
ATP2A3	ENSG00000074370.13	1115.51150	2676.87660	-1.26280	67.95140	65.15010	K562	WDR43
ATP2A3	ENSG00000074370.13	5945.53770	1505.76400	1.98120	52.25210	49.57850	K562	HSPD1
ATP2A3	ENSG00000074370.13	2195.23130	4989.92520	-1.18460	50.31700	47.67670	K562	RBM15
ATP2A3	ENSG00000074370.13	427.51810	1974.09460	-2.20710	50.67210	47.65310	K562	PCBP3
ATP2A3	ENSG00000074370.13	717.93930	2000.56510	-1.47850	47.13660	44.81900	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.

4 RBPs can affect the splicing of ATP2A3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ATP2A3	ENSG00000074370.13	chr17	-	3831956	3832113			3831956	3832074	3832621	3832739	0.17900	0.00000	0.00001	longer	K562	AQR
A3SS	ATP2A3	ENSG00000074370.13	chr17	-	3846684	3846857			3846684	3846816	3847997	3848100	0.07500	0.00053	0.00395	longer	K562	AQR
SE	ATP2A3	ENSG00000074370.13	chr17	-	3831520	3831621			3827168	3828735	3831956	3832074	-0.06200	0.00144	0.09965	excluded	K562	XRCC6
SE	ATP2A3	ENSG00000074370.13	chr17	-	3848353	3848442			3847997	3848100	3850684	3851149	-0.07500	0.00177	0.04882	excluded	K562	AKAP8L
MXE	ATP2A3	ENSG00000074370.13	chr17	-	3831274	3831332	3831520	3831606	3828689	3828735	3831956	3832074	-0.42800	0.00261	0.03568	2included	K562	DROSHA

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATP2A3

General Information

Functions

Localization

Domains (AlphaFold: ATP2A3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATP2A3 is not avaliable on ENCORE database.

22 proteins are bound to ATP2A3 RNA:

eCLIP assay for ATP2A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.

106 RBPs can affect the gene expression of ATP2A3 :

The Knockdown/knockout RNA-Seq assay for ATP2A3 is not available on ENCORE database.

4 RBPs can affect the splicing of ATP2A3 :

The Knockdown/knockout RNA-Seq assay for ATP2A3 is not avaliable on ENCORE database.