ARID4A

General Information

Gene Name       : ARID4A
Gene ID             : ENSG00000032219.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARID4A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARID4AENSG00000032219.1811.468.509.98ENCSR000AEF
HepG2ARID4AENSG00000032219.186.918.007.46ENCSR985KAT
K562ARID4AENSG00000032219.185.376.305.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARID4A is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARID4A RNA is bound by 20 proteins.  







eCLIP assay for ARID4A is not avaliable on ENCORE database.





20 proteins are bound to ARID4A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145877166158771675+3'-UTR,CDS,intron-Proximal3.008143.55800HepG2BCLAF1
chr145876651358766562+5'-UTR,intron-Proximal4.376014.04622HepG2GRWD1
chr145876527858765367+5'-UTR5.5308712.80623HepG2NCBP2
chr145876651358766627+5'-UTR,CDS,intron-Proximal4.141265.64484HepG2PRPF8
chr145876651358766575+5'-UTR,CDS,intron-Proximal3.813738.40792HepG2PPIG
chr145876537158765419+5'-UTR,intron-Proximal3.602905.97027HepG2GRWD1
chr145881141158811470+5'-UTR,CDS,intron-Proximal3.895154.68902HepG2PPIG
chr145876644758766517+5'-UTR,intron-Proximal4.028503.82050HepG2SF3B4
chr145876651358766582+5'-UTR,CDS,intron-Proximal3.096493.03570HepG2NCBP2
chr145876645258766571+5'-UTR,intron-Proximal3.437688.98695K562SF3B4
chr145883175858831834+CDS3.960494.82082K562ZNF622
chr145879495658795004+CDS4.283827.49468HepG2BCLAF1
chr145882054458820574+CDS,intron-Proximal3.692766.39464HepG2BCLAF1
chr145879025058790340+CDS,intron-Proximal3.863098.19964HepG2BCLAF1
chr145883194658832009+CDS3.503987.02567HepG2BCLAF1
chr145879678058796872+CDS3.242786.28688K562UCHL5
chr145878542958785453+CDS3.300624.26492HepG2BCLAF1
chr145881451758814581+CDS4.548044.55944K562ZNF622
chr145882764258827757+CDS4.511085.82083HepG2GRWD1
chr145879680358796890+CDS,intron-Proximal3.277013.91443HepG2PPIG
chr145882767458827753+CDS3.104924.35477K562UCHL5
chr145879026858790354+CDS,intron-Proximal5.255568.87880K562ZNF622
chr145881798558818050+CDS,intron-Proximal4.321403.71613K562UCHL5
chr145879676658796864+CDS4.6896912.86440HepG2BCLAF1
chr145882041058820464+CDS3.617364.40383K562UCHL5
chr145876830258768330+CDS,intron-Distal3.673844.17155HepG2BCLAF1
chr145883170558831851+CDS4.0431720.95676HepG2BCLAF1
chr145881313858813222+CDS3.427553.63043HepG2GRWD1
chr145882046658820506+CDS4.950116.71715HepG2BCLAF1
chr145883171758831848+CDS3.197188.75149HepG2HLTF
chr145883220758832275+CDS,intron-Proximal4.154744.49508K562U2AF2
chr145883150658831558+CDS4.485905.10960K562ZNF622
chr145879030558790376+CDS,intron-Proximal4.176585.29694K562EFTUD2
chr145881379058813831+CDS5.107206.13315HepG2BCLAF1
chr145879028058790344+CDS,intron-Proximal3.422065.17903K562UCHL5
chr145881373758813809+CDS,intron-Proximal3.671884.24220K562ZNF622
chr145878546658785521+CDS3.930533.80193HepG2GRWD1
chr145883171458831858+CDS3.325864.21853HepG2EIF3D
chr145883169958831822+CDS3.639139.45444K562UCHL5
chr145883149358831594+CDS3.337627.97025HepG2BCLAF1
chr145876837758768407+CDS,intron-Distal3.613905.76104HepG2BCLAF1
chr145881315058813224+CDS,intron-Proximal3.872625.14848K562ZNF622
chr145876829358768406+CDS,intron-Distal,intron-Proximal5.3710610.06265HepG2PPIG
chr145883169758831758+CDS3.397185.65306K562ZNF622
chr145882585058825883+CDS4.261626.65960HepG2BCLAF1
chr145879027458790343+CDS,intron-Proximal3.433476.06370HepG2BUD13
chr145883112058831200+CDS3.343633.63681K562RBM15
chr145876830358768406+CDS,intron-Distal3.685045.14253HepG2GRWD1
chr145879020258790263+CDS,intron-Proximal4.042293.82000HepG2GRWD1
chr145883221958832272+CDS,intron-Proximal4.291626.02363HepG2U2AF2
chr145877186258771928+intron-Distal4.132514.72162K562KHSRP
chr145880177958801860+intron-Distal3.399103.06005HepG2QKI
chr145879650058796558+intron-Distal4.401204.26925HepG2KHSRP
chr145879659358796661+intron-Distal,intron-Proximal3.607853.06150K562KHSRP
chr145880162958801801+intron-Distal3.560455.12612HepG2HNRNPL
chr145880773558807869+intron-Distal4.320744.75674K562MATR3
chr145877180958771862+intron-Distal,intron-Proximal4.035323.45805K562KHSRP
chr145881814558818233+intron-Distal6.5017815.09454HepG2XPO5
chr145880776558807852+intron-Distal4.393083.42734K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARID4A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARID4A is not available on ENCORE database.

  • 68 RBPs can affect the levels of ARID4A.  








The Knockdown/knockout RNA-Seq assay for ARID4A is not available on ENCORE database.





68 RBPs can affect the gene expression of ARID4A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARID4AENSG00000032219.14581.67840771.34290-0.407204.400703.66840HepG2ACO1
ARID4AENSG00000032219.14489.03730915.63200-0.904808.602107.72170HepG2AKAP1
ARID4AENSG00000032219.14435.92850604.10540-0.470702.171601.34480HepG2BCCIP
ARID4AENSG00000032219.141118.22270918.620300.283602.099201.42000HepG2CALR
ARID4AENSG00000032219.14949.73790719.793700.399802.673701.91330HepG2CIRBP
ARID4AENSG00000032219.14551.72860827.42970-0.584707.610506.64260HepG2CELF1
ARID4AENSG00000032219.14749.82720889.78110-0.246902.364001.67060HepG2DAZAP1
ARID4AENSG00000032219.14846.10130638.475600.406103.223102.23580HepG2DDX24
ARID4AENSG00000032219.14412.76040593.93900-0.525002.633901.87690HepG2DDX55
ARID4AENSG00000032219.14415.04200753.38400-0.860107.603006.62430HepG2DDX6
ARID4AENSG00000032219.141148.49410737.970100.6380010.873809.71330HepG2DKC1
ARID4AENSG00000032219.14473.49210597.36000-0.335302.913502.24720HepG2DNAJC2
ARID4AENSG00000032219.141213.39570877.745200.467106.280505.11010HepG2EIF4G1
ARID4AENSG00000032219.141193.34480854.666800.481503.860402.58540HepG2ESF1
ARID4AENSG00000032219.141512.995701250.879100.274403.014702.39130HepG2ETF1
ARID4AENSG00000032219.14777.10120502.227000.629706.443505.27250HepG2FUBP3
ARID4AENSG00000032219.141110.97520795.279800.482203.861602.79870HepG2G3BP2
ARID4AENSG00000032219.141288.77870988.568100.382502.788002.15640HepG2HNRNPLL
ARID4AENSG00000032219.14847.86450700.879600.274602.017501.39260HepG2IGF2BP1
ARID4AENSG00000032219.141220.18300761.589400.679907.132506.09800HepG2IGF2BP2
ARID4AENSG00000032219.14982.933701374.93930-0.484203.165102.27440HepG2LARP4
ARID4AENSG00000032219.141146.55040807.843300.505104.033703.24290HepG2MAGOH
ARID4AENSG00000032219.141548.85640876.555400.8212011.7723010.32940HepG2NSUN2
ARID4AENSG00000032219.14949.00600739.734600.359303.760703.07620HepG2PCBP1
ARID4AENSG00000032219.141246.91830817.204100.609503.947202.71440HepG2PCBP2
ARID4AENSG00000032219.14689.57320458.295900.589304.614603.59970HepG2PRPF8
ARID4AENSG00000032219.14955.45130785.665000.282202.730902.11840HepG2PUS1
ARID4AENSG00000032219.14999.02390815.197900.293302.259701.68500HepG2QKI
ARID4AENSG00000032219.141097.90930739.846900.569406.442205.45290HepG2RBM25
ARID4AENSG00000032219.141023.15350837.692200.288402.529602.00910HepG2NELFE
ARID4AENSG00000032219.141224.45550780.200700.650109.290908.26090HepG2RECQL
ARID4AENSG00000032219.141147.31860774.544900.566703.343502.30350HepG2RPS10
ARID4AENSG00000032219.14465.29030588.56340-0.339101.973601.44640HepG2RPS19
ARID4AENSG00000032219.141044.76980737.974100.501403.046002.20840HepG2RPS3A
ARID4AENSG00000032219.141659.804601170.762000.503502.661202.00040HepG2SF3A3
ARID4AENSG00000032219.14946.22220783.663700.271802.235101.69640HepG2SF3B4
ARID4AENSG00000032219.141002.15600807.484900.311503.226202.47850HepG2SLBP
ARID4AENSG00000032219.14937.780401180.86510-0.332503.925503.35880HepG2SRFBP1
ARID4AENSG00000032219.141234.65690817.977300.593909.987109.21360HepG2SRSF1
ARID4AENSG00000032219.141148.06540831.521700.465306.180405.29780HepG2SRSF5
ARID4AENSG00000032219.141618.874201025.278300.6589015.3635014.35380HepG2SSB
ARID4AENSG00000032219.14737.60500945.69970-0.358504.238603.49790HepG2SUCLG1
ARID4AENSG00000032219.14885.92390591.292000.583204.477803.64860HepG2SUPV3L1
ARID4AENSG00000032219.141003.86820735.235700.449204.879704.16780HepG2TAF15
ARID4AENSG00000032219.14870.70770675.575300.366003.020902.15270HepG2TIA1
ARID4AENSG00000032219.14786.54030653.364200.267501.763401.34530HepG2TIAL1
ARID4AENSG00000032219.14471.56370659.15230-0.483205.289304.56090HepG2TRIM56
ARID4AENSG00000032219.141017.608701828.09470-0.845202.454501.53190HepG2U2AF2
ARID4AENSG00000032219.14557.576601002.42500-0.8463016.7289015.43950HepG2UTP3
ARID4AENSG00000032219.141148.12690741.477500.6307012.4006011.15040HepG2ZC3H8
ARID4AENSG00000032219.14844.420201141.91670-0.435406.933606.16990HepG2ZNF622
ARID4AENSG00000032219.141082.64770787.787000.458602.661701.39480HepG2ZRANB2
ARID4AENSG00000032219.14665.71640948.55290-0.510806.415205.60300K562AGGF1
ARID4AENSG00000032219.14785.75800987.00960-0.329002.253201.66100K562AKAP8L
ARID4AENSG00000032219.14792.873301001.57700-0.337102.523701.34070K562APOBEC3C
ARID4AENSG00000032219.141275.40810822.295300.633107.088706.22010K562AQR
ARID4AENSG00000032219.14487.90470643.83030-0.400102.631701.80530K562FIP1L1
ARID4AENSG00000032219.14325.11370550.95820-0.761008.518907.52790K562FXR1
ARID4AENSG00000032219.14892.79030641.451700.476902.415901.76130K562G3BP2
ARID4AENSG00000032219.14451.65360722.89980-0.678606.925105.72130K562GRSF1
ARID4AENSG00000032219.14397.34820529.53510-0.414302.135901.32440K562HNRNPM
ARID4AENSG00000032219.14533.13640679.95350-0.350902.476201.67790K562MAGOH
ARID4AENSG00000032219.14506.37670775.75880-0.615406.072304.74900K562METAP2
ARID4AENSG00000032219.14539.55360673.40300-0.319702.549801.77230K562MTPAP
ARID4AENSG00000032219.14642.95530471.075100.448703.463802.56170K562POLR2G
ARID4AENSG00000032219.14476.87410730.83940-0.615905.557804.32760K562PPIG
ARID4AENSG00000032219.14448.34620660.61710-0.559205.349004.45220K562PTBP1
ARID4AENSG00000032219.14484.75620633.45580-0.386002.512001.71430K562RBM22
ARID4AENSG00000032219.14568.75940738.30530-0.376403.241402.36190K562SF3A3
ARID4AENSG00000032219.14447.21070667.50780-0.577804.743203.61260K562SF3B4
ARID4AENSG00000032219.141116.63120844.782400.402402.899801.50460K562SSRP1
ARID4AENSG00000032219.14465.12870655.43940-0.494803.547602.74270K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARID4A is not available on ENCORE database.





10 RBPs can affect the splicing of ARID4A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARID4AENSG00000032219.14chr14+588181705881839458817790588180415882037558820573-0.140000.000060.00190excludedHepG2U2AF1
SEARID4AENSG00000032219.14chr14+588327415883294858832235588323405883360058833747-0.131000.000030.00070excludedHepG2U2AF2
SEARID4AENSG00000032219.14chr14+588181705881839458817790588180415882037558820573-0.121000.001820.08729excludedHepG2NCBP2
SEARID4AENSG00000032219.14chr14+588182625881839458817790588180415882037558820573-0.073000.002370.08488excludedHepG2SFPQ
SEARID4AENSG00000032219.14chr14+588327415883294858832235588323405883360058833747-0.192000.001610.03749excludedHepG2SRSF1
SEARID4AENSG00000032219.14chr14+588137375881383558813128588132235881436458814596-0.338000.000860.02720excludedHepG2SF3A3
SEARID4AENSG00000032219.14chr14+5881826258818394588177905881804158820375588205730.126000.000110.01414includedK562HNRNPUL1
SEARID4AENSG00000032219.14chr14+5881817058818394588177905881804158820375588205730.145000.003150.06608includedK562AGGF1
SEARID4AENSG00000032219.14chr14+5878811758788230587854285878552358790202587903350.134000.002350.07431includedHepG2HNRNPC
MXEARID4AENSG00000032219.14chr14+58813078588132235881373758813835588114125881148558814364588145960.275000.017430.098591includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARID4A is not avaliable on ENCORE database.