ZNF442

General Information

Gene Name       : ZNF442
Gene ID             : ENSG00000198342.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF442)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF442ENSG00000198342.90.410.070.24ENCSR000AEF
HepG2ZNF442ENSG00000198342.91.131.631.38ENCSR985KAT
K562ZNF442ENSG00000198342.91.781.691.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF442 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF442 RNA is bound by 2 proteins.  







eCLIP assay for ZNF442 is not avaliable on ENCORE database.





2 proteins are bound to ZNF442 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191247578112475901-5'-UTR,intron-Distal3.969093.17740K562CSTF2T
chr191247124212471310-intron-Distal4.191583.83958HepG2QKI
chr191247131712471405-intron-Distal5.151814.99795K562QKI
chr191247476712474833-intron-Distal4.587346.32269K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF442 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF442 is not available on ENCORE database.

  • 26 RBPs can affect the levels of ZNF442.  








The Knockdown/knockout RNA-Seq assay for ZNF442 is not available on ENCORE database.





26 RBPs can affect the gene expression of ZNF442 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF442ENSG00000198342.552.7127021.353301.303602.532601.93240HepG2DDX3X
ZNF442ENSG00000198342.565.6905019.484801.753203.688402.95350HepG2EIF4A3
ZNF442ENSG00000198342.547.5911018.538901.360002.561101.90940HepG2IGF2BP2
ZNF442ENSG00000198342.585.7970019.672602.124607.513606.44770HepG2MAGOH
ZNF442ENSG00000198342.555.9455020.246801.466203.104302.43580HepG2NCBP2
ZNF442ENSG00000198342.555.0911023.926301.203102.401501.58490HepG2PABPC1
ZNF442ENSG00000198342.576.4890028.311301.433804.212703.37160HepG2SF3A3
ZNF442ENSG00000198342.546.1543018.451001.322702.033601.36830HepG2SNRNP70
ZNF442ENSG00000198342.563.0813032.075100.975701.960801.54370HepG2SRSF1
ZNF442ENSG00000198342.554.2128028.373500.934001.892401.36140HepG2SRSF5
ZNF442ENSG00000198342.5101.6211042.114801.270705.354404.68750HepG2SSB
ZNF442ENSG00000198342.565.0869028.844701.174002.355501.72500HepG2SUPV3L1
ZNF442ENSG00000198342.537.8586014.697601.364902.297601.83320HepG2TIAL1
ZNF442ENSG00000198342.555.4744011.587302.259205.379204.51880HepG2U2AF1
ZNF442ENSG00000198342.5108.00540176.75720-0.710703.022001.72310K562APOBEC3C
ZNF442ENSG00000198342.5145.1373096.070400.595202.071901.35800K562EIF4A3
ZNF442ENSG00000198342.5171.6028090.263800.926803.993903.10590K562G3BP2
ZNF442ENSG00000198342.596.2692057.316700.748001.901401.39520K562HNRNPC
ZNF442ENSG00000198342.5137.9747080.616500.775202.301501.57120K562HSPD1
ZNF442ENSG00000198342.593.21280148.41760-0.671102.658001.33760K562PCBP1
ZNF442ENSG00000198342.5118.2146069.955200.756802.148701.41480K562PCBP3
ZNF442ENSG00000198342.557.69800147.50650-1.354208.013606.92410K562PTBP1
ZNF442ENSG00000198342.579.64450149.77610-0.911203.367702.77740K562PUS1
ZNF442ENSG00000198342.579.66560141.42710-0.828003.454402.51000K562RBM22
ZNF442ENSG00000198342.535.86340144.60840-2.0116012.2631010.77000K562SRSF1
ZNF442ENSG00000198342.543.19820146.34690-1.7603010.598909.06370K562TARDBP
ZNF442ENSG00000198342.5147.2629078.285000.911504.029802.96810K562WDR3
ZNF442ENSG00000198342.5265.60170185.557600.517302.611201.77770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF442 is not available on ENCORE database.





2 RBPs can affect the splicing of ZNF442 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF442ENSG00000198342.5chr19-1246380112463928124628231246288412476346124764530.299000.000660.09514includedK562NSUN2
SEZNF442ENSG00000198342.5chr19-124638011246392812462604124628841247634612476475-0.151000.002680.07058excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF442 is not avaliable on ENCORE database.