U1

General Information

Gene Name       : U1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: U1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for U1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • U1 RNA is bound by 3 proteins.  







eCLIP assay for U1 is not avaliable on ENCORE database.





3 proteins are bound to U1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11686176816861793-intron-Distal4.2583553.43956HepG2XPO5
chr11719913817199156+intron-Distal4.592759.12317K562NSUN2
chr11686183116861848-intron-Distal4.4633710.53160HepG2XPO5
chr11719913117199138+intron-Distal4.592759.12317K562NSUN2
chr11686179316861815-intron-Distal4.4106564.62057HepG2XPO5
chr11686181516861831-intron-Distal4.3261613.06160HepG2XPO5
chr11720018917200235+intron-Distal,intron-Proximal7.7114820.96333K562GEMIN5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for U1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for U1 is not available on ENCORE database.

  • 20 RBPs can affect the levels of U1.  








The Knockdown/knockout RNA-Seq assay for U1 is not available on ENCORE database.





20 RBPs can affect the gene expression of U1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
U1ENSG00000228549.216.401602.330902.814802.031501.56790HepG2AKAP1
U1ENSG00000228549.28.233500.0000099999.999902.066101.41010HepG2CNOT7
U1ENSG00000228549.215.277602.229802.776302.098801.54580HepG2DDX3X
U1ENSG00000233421.316.651702.255702.883902.405001.59790K562BOP1
U1ENSG00000228549.244.3669010.326002.103103.872402.57540K562CNOT7
U1ENSG00000233421.339.410803.849103.355906.108104.47450K562CNOT7
U1ENSG00000228549.270.574205.521603.675906.817405.33360K562EFTUD2
U1ENSG00000233421.346.883702.843404.043309.077007.33420K562EFTUD2
U1ENSG00000228549.227.686106.709402.044802.728001.88080K562FMR1
U1ENSG00000228549.223.872406.294101.923202.199801.49010K562GPKOW
U1ENSG00000233421.323.059202.289803.331903.267302.40660K562GPKOW
U1ENSG00000228549.240.1651010.068201.996003.166702.36070K562GRSF1
U1ENSG00000228549.274.0535010.861902.769209.325408.28100K562HNRNPC
U1ENSG00000233421.346.933005.635603.057906.810105.91260K562HNRNPC
U1ENSG00000228549.228.347906.144002.205902.996102.08260K562METAP2
U1ENSG00000233421.314.433102.235102.690802.138501.36820K562METAP2
U1ENSG00000228549.238.872309.105602.093804.038303.07620K562MTPAP
U1ENSG00000228549.233.8679010.115101.743302.881102.12150K562NSUN2
U1ENSG00000233421.327.221106.854701.989502.768402.02190K562NSUN2
U1ENSG00000228549.254.683109.920602.462505.884704.06490K562PABPC1
U1ENSG00000233421.331.372403.697803.084604.431702.83820K562PABPC1
U1ENSG00000228549.222.983705.373302.096602.090401.43410K562PRPF8
U1ENSG00000233421.326.586308.077401.718602.261601.39220K562PUM2
U1ENSG00000228549.234.589909.984101.792603.054202.19890K562SF3A3
U1ENSG00000228549.245.041109.214202.289204.291902.25140K562STIP1
U1ENSG00000233421.334.744903.432103.339505.286803.03070K562STIP1
U1ENSG00000228549.223.733606.753701.813102.235901.50740K562TIA1
U1ENSG00000228549.291.5888010.725403.0940014.3296012.84980K562UPF1
U1ENSG00000233421.356.878607.268202.968108.785107.59280K562UPF1
U1ENSG00000228549.228.648909.177101.642302.425401.60410K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for U1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of U1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for U1 is not avaliable on ENCORE database.