RP11-6N17.9

General Information

Gene Name : RP11-6N17.9
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-6N17.9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-6N17.9 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-6N17.9 RNA is bound by 23 proteins.

eCLIP assay for RP11-6N17.9 is not avaliable on ENCORE database.

23 proteins are bound to RP11-6N17.9 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	46025370	46025424	+	3'-UTR,intron-Distal	5.43992	6.76118	K562	LIN28B
chr17	46051092	46051137	+	intron-Distal,intron-Proximal	3.07605	5.49287	K562	TIA1
chr17	46025475	46025569	+	3'-UTR,intron-Distal	4.66207	20.03105	K562	UPF1
chr17	46024811	46024843	+	3'-UTR,intron-Distal	3.06792	5.09741	K562	UPF1
chr17	46023310	46023356	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.40492	4.04629	HepG2	G3BP1
chr17	46024483	46024542	+	3'-UTR,intron-Distal	3.95485	7.15385	HepG2	AKAP1
chr17	46026251	46026346	+	intron-Distal	4.49788	4.98640	K562	YBX3
chr17	46024387	46024471	+	3'-UTR,intron-Distal	5.01585	33.74474	HepG2	UPF1
chr17	46024691	46024746	+	3'-UTR,intron-Distal	3.01579	3.33646	HepG2	AKAP1
chr17	46048459	46048499	+	5'-UTR,intron-Distal	4.95643	10.37430	HepG2	NCBP2
chr17	46025712	46025846	+	intron-Distal	4.53747	14.32982	HepG2	AKAP1
chr17	46048520	46048572	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.70319	10.61259	HepG2	NCBP2
chr17	46023261	46023344	+	3'-UTR,CDS,intron-Distal	3.07367	5.97777	HepG2	PPIG
chr17	46024490	46024526	+	3'-UTR,intron-Distal	4.18908	4.66555	K562	FAM120A
chr17	46026505	46026640	+	intron-Distal	4.01018	11.88509	K562	UPF1
chr17	46024700	46024744	+	3'-UTR,intron-Distal	4.06792	5.48330	K562	UPF1
chr17	46026575	46026654	+	intron-Distal	3.27694	6.91621	HepG2	PCBP2
chr17	46025718	46025836	+	intron-Distal	4.29744	15.14460	HepG2	UPF1
chr17	46026059	46026175	+	intron-Distal	3.45475	3.29111	K562	FAM120A
chr17	46025325	46025385	+	3'-UTR,intron-Distal	4.89402	6.81418	HepG2	UPF1
chr17	46025815	46025832	+	intron-Distal	4.97948	6.29854	K562	UPF1
chr17	46048505	46048552	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16047	3.94177	HepG2	FASTKD2
chr17	46025476	46025499	+	3'-UTR,intron-Distal	4.12876	3.19668	HepG2	UPF1
chr17	46051029	46051120	+	3'-UTR,intron-Distal,intron-Proximal	4.17931	8.65427	K562	AQR
chr17	46024567	46024620	+	3'-UTR,intron-Distal	4.29762	11.34516	K562	FAM120A
chr17	46024575	46024629	+	3'-UTR,intron-Distal	5.45394	8.80636	K562	UPF1
chr17	46025331	46025420	+	3'-UTR,intron-Distal	4.03233	15.05942	HepG2	LIN28B
chr17	46024229	46024291	+	3'-UTR,intron-Distal	3.68397	12.30329	HepG2	PCBP2
chr17	46025137	46025224	+	3'-UTR,intron-Distal	5.38194	9.50783	HepG2	UPF1
chr17	46024284	46024350	+	3'-UTR,intron-Distal	4.00701	6.61024	K562	FAM120A
chr17	46048511	46048560	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.56811	5.70278	K562	AQR
chr17	46024391	46024474	+	3'-UTR,intron-Distal	4.17881	15.76818	HepG2	AKAP1
chr17	46048499	46048520	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.06888	10.33507	HepG2	NCBP2
chr17	46024680	46024738	+	3'-UTR,intron-Distal	4.08753	5.85347	HepG2	UPF1
chr17	46024285	46024356	+	3'-UTR,intron-Distal	3.08437	4.48738	K562	UPF1
chr17	46024481	46024546	+	3'-UTR,intron-Distal	3.93222	7.81366	HepG2	UPF1
chr17	46024498	46024563	+	3'-UTR,intron-Distal	3.85254	7.13820	K562	UPF1
chr17	46051137	46051183	+	intron-Distal,intron-Proximal	3.40990	3.37074	K562	TIA1
chr17	46025731	46025820	+	intron-Distal	5.01109	5.15256	K562	AKAP1
chr17	46048514	46048562	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.36172	11.17766	HepG2	PRPF8
chr17	46024531	46024558	+	3'-UTR,intron-Distal	3.90953	3.38753	K562	FAM120A
chr17	46024405	46024479	+	3'-UTR,intron-Distal	3.22387	5.25366	HepG2	FAM120A
chr17	46025339	46025414	+	3'-UTR,intron-Distal	3.46058	6.83930	K562	FAM120A
chr17	46024583	46024633	+	3'-UTR,intron-Distal	4.82527	6.81418	HepG2	UPF1
chr17	46048638	46048701	+	5'-UTR,CDS,intron-Proximal	3.90539	4.77154	HepG2	NCBP2
chr17	46051765	46051859	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.48513	31.24603	K562	ZNF622
chr17	46051764	46051844	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.72901	11.71350	K562	SRSF1
chr17	46051765	46051791	+	3'-UTR,CDS,intron-Proximal	3.50994	23.46291	HepG2	BCLAF1
chr17	46022810	46022849	+	intron-Distal,intron-Proximal	4.44180	3.97974	HepG2	RBFOX2
chr17	46022889	46022980	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.47714	8.20183	HepG2	EFTUD2
chr17	46048726	46048744	+	5'-UTR,CDS,intron-Proximal	3.66842	6.23662	HepG2	NCBP2
chr17	46051364	46051398	+	3'-UTR,CDS,intron-Proximal	3.55509	15.26030	HepG2	BCLAF1
chr17	46051765	46051784	+	3'-UTR,CDS,intron-Proximal	3.17926	3.24717	K562	ZNF800
chr17	46051383	46051438	+	3'-UTR,CDS,intron-Proximal	3.83931	14.87703	HepG2	PRPF8
chr17	46022956	46023025	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15925	6.18341	HepG2	PRPF8
chr17	46051235	46051295	+	intron-Proximal	3.90489	13.07381	K562	SF3B4
chr17	46050883	46050916	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.84693	22.73556	K562	ZNF622
chr17	46048674	46048751	+	5'-UTR,CDS,intron-Proximal	4.43676	51.52664	K562	SF3B4
chr17	46048677	46048726	+	5'-UTR,intron-Proximal	4.14553	18.84279	HepG2	SF3A3
chr17	46022863	46023024	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56731	5.40420	HepG2	AQR
chr17	46051367	46051398	+	3'-UTR,CDS,intron-Proximal	3.40658	18.89408	K562	ZNF622
chr17	46050884	46050944	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.24607	24.71865	K562	UCHL5
chr17	46051765	46051777	+	3'-UTR,CDS,intron-Proximal	3.85010	7.04834	K562	GRWD1
chr17	46051765	46051785	+	3'-UTR,CDS,intron-Proximal	5.39559	35.91039	HepG2	PPIG
chr17	46051764	46051803	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.08563	5.33097	HepG2	SRSF1
chr17	46022984	46023049	+	intron-Distal,intron-Proximal	6.58833	14.81270	HepG2	EFTUD2
chr17	46022849	46022913	+	intron-Distal,intron-Proximal	5.30900	13.82570	HepG2	RBFOX2
chr17	46048639	46048719	+	5'-UTR,CDS,intron-Proximal	4.22510	14.41338	HepG2	SF3B4
chr17	46050884	46050928	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.51805	21.13788	HepG2	PPIG
chr17	46050884	46050911	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.05528	4.65682	HepG2	UCHL5
chr17	46050884	46050932	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.21504	10.15327	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-6N17.9 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-6N17.9 is not available on ENCORE database.
No RBPs affect the gene expression of RP11-6N17.9 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-6N17.9 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-6N17.9 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-6N17.9 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-6N17.9 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46023210	46023355	46023226	46023355	46022924	46022978	0.10000	0.00002	0.00020	longer	K562	AQR
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051059	46050884	46051016	46051296	46051397	0.13100	0.00000	0.00000	longer	HepG2	HNRNPK
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050900	46051062	46050900	46051016	46051296	46051397	0.10800	0.00001	0.00191	longer	HepG2	SF3A3
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051059	46050884	46051016	46051296	46051397	0.08400	0.00005	0.00866	longer	HepG2	PCBP1
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051059	46050884	46051016	46051296	46051397	0.15700	0.00000	0.00002	longer	K562	U2AF2
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051059	46050884	46051016	46051296	46051397	0.12900	0.00000	0.00009	longer	HepG2	PRPF8
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051062	46050884	46051016	46051296	46051397	0.09000	0.00009	0.09605	longer	HepG2	HNRNPM
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050884	46051062	46050884	46051016	46051296	46051397	0.11900	0.00020	0.03150	longer	HepG2	FTO
A5SS	RP11-6N17.9	ENSG00000263798.1	chr17	+	46050900	46051062	46050900	46051016	46051296	46051397	0.06900	0.00048	0.04477	longer	HepG2	U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-6N17.9

General Information

Functions

Localization

Domains (AlphaFold: RP11-6N17.9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-6N17.9 is not avaliable on ENCORE database.

23 proteins are bound to RP11-6N17.9 RNA:

eCLIP assay for RP11-6N17.9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-6N17.9 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-6N17.9 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-6N17.9 is not available on ENCORE database.

9 RBPs can affect the splicing of RP11-6N17.9 :

The Knockdown/knockout RNA-Seq assay for RP11-6N17.9 is not avaliable on ENCORE database.