RP11-6N13.1

General Information

Gene Name       : RP11-6N13.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-6N13.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-6N13.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-6N13.1 RNA is bound by 19 proteins.  







eCLIP assay for RP11-6N13.1 is not avaliable on ENCORE database.





19 proteins are bound to RP11-6N13.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5104674714104674779-intron-Distal4.325004.58306K562SAFB2
chr5104537331104537357-intron-Distal4.249733.59909K562EXOSC5
chr5104536094104536167-intron-Distal4.677545.44508K562EXOSC5
chr5104562755104562902-intron-Distal3.910713.24603K562KHSRP
chr5104728549104728627-intron-Distal3.806633.05875K562RBM15
chr5104726690104726746-intron-Distal4.827805.62258K562KHSRP
chr5104713265104713342-intron-Distal3.464004.74884K562SAFB2
chr5104683921104683995-intron-Distal4.137963.57189K562ILF3
chr5104490795104490850-intron-Distal5.4945212.44694K562TARDBP
chr5104699750104699830-intron-Distal3.585197.01633K562KHSRP
chr5104622713104622774-intron-Distal3.923783.42844K562KHSRP
chr5104721181104721251-intron-Distal4.670306.27552K562KHSRP
chr5104508396104508496-intron-Distal4.439385.08344K562TARDBP
chr5104334105104334182-intron-Distal3.914364.12694HepG2CSTF2
chr5104700848104700911-intron-Distal3.698337.86844K562EXOSC5
chr5104094876104094937-intron-Distal3.299783.34990HepG2PTBP1
chr5104672291104672404-intron-Distal3.919043.46942K562KHDRBS1
chr5104650095104650162-intron-Distal4.288344.70117K562HNRNPL
chr5104489228104489312-intron-Distal3.123953.36168K562SAFB2
chr5104698083104698135-intron-Distal3.932876.25630K562HNRNPM
chr5104698770104698820-intron-Distal5.107846.73731K562EXOSC5
chr5104705269104705314-intron-Distal3.950793.24603K562KHSRP
chr5104710711104710782-intron-Distal4.261504.37667K562SAFB2
chr5104698204104698265-intron-Distal5.4708310.28698K562HNRNPM
chr5104721414104721512-intron-Distal4.565045.93583K562QKI
chr5104570525104570625-intron-Distal3.533734.70430K562CSTF2T
chr5104696623104696673-intron-Distal4.263024.07352K562KHSRP
chr5104557226104557269-intron-Distal4.422064.48623K562EXOSC5
chr5104440739104440872-intron-Distal5.042516.12104HepG2QKI
chr5104667136104667186-intron-Distal6.0683311.49593K562PTBP1
chr5104698879104698921-intron-Distal5.385069.68215K562EXOSC5
chr5104727117104727179-intron-Distal3.623975.95946K562KHSRP
chr5104490679104490732-intron-Distal3.485934.60942K562TARDBP
chr5104726801104726858-intron-Distal3.874366.89441K562KHSRP
chr5104698496104698577-intron-Distal6.7279829.61359K562HNRNPM
chr5104698449104698575-intron-Distal4.062915.95943HepG2HNRNPM
chr5104516659104516806-intron-Distal3.485556.59733K562KHSRP
chr5104440689104440834-intron-Distal3.893084.69074K562PTBP1
chr5104328069104328166-intron-Distal4.888626.23638HepG2QKI
chr5104516572104516635-intron-Distal4.070523.66668K562KHSRP
chr5104705055104705092-intron-Distal3.803353.49011K562KHSRP
chr5104697898104697986-intron-Distal4.559199.69330K562EXOSC5
chr5104508270104508359-intron-Distal4.253964.85626K562TARDBP
chr5104362147104362305-intron-Distal4.330573.89294K562KHSRP
chr5104715927104716029-intron-Distal4.606595.85485K562KHSRP
chr5104556145104556202-intron-Distal3.876373.49896K562KHDRBS1
chr5104699693104699744-intron-Distal4.046343.02234K562KHSRP
chr5104698136104698221-intron-Distal4.482415.16513HepG2HNRNPM
chr5104673411104673515-intron-Distal4.570496.68667K562SAFB2
chr5104380386104380450-intron-Distal4.116193.88340K562TARDBP
chr5104631018104631132-intron-Distal3.666843.26999K562KHSRP
chr5104670701104670795-intron-Distal3.855893.60879K562HNRNPL
chr5104590664104590752-intron-Distal4.070303.09122HepG2PTBP1
chr5104695351104695417-intron-Distal3.915373.49896K562KHDRBS1
chr5104556957104557047-intron-Distal4.289354.27660K562HNRNPL
chr5104709887104709972-intron-Distal4.527636.44435K562SAFB2
chr5104667136104667243-intron-Distal4.375784.07628HepG2PTBP1
chr5104350055104350203-intron-Distal3.353693.68839K562KHSRP
chr5104713756104713841-intron-Distal4.787747.33276K562SAFB2
chr5104700552104700630-intron-Distal3.965798.47592K562EXOSC5
chr5104717859104717910-intron-Distal3.823163.25538K562KHSRP
chr5104276661104276759-intron-Distal6.5055716.14543K562PTBP1
chr5104590754104590800-intron-Distal4.622803.55787K562PTBP1
chr5104335972104336039-intron-Distal3.714923.37631K562HNRNPL
chr5104500780104500853-intron-Distal3.878953.87596K562KHDRBS1
chr5104643885104643983-intron-Distal3.659785.54602K562QKI
chr5104533505104533634-intron-Distal3.034594.33816K562HNRNPL
chr5104354891104354983-intron-Distal5.439647.41017K562PTBP1
chr5104722101104722154-intron-Distal3.419323.26015K562PTBP1
chr5104706018104706074-intron-Distal4.063555.14864K562KHSRP
chr5104696792104696847-intron-Distal3.148103.46531K562KHSRP
chr5104726603104726690-intron-Distal3.132449.17902K562KHSRP
chr5104490592104490656-intron-Distal3.509584.38938K562TARDBP
chr5104727046104727096-intron-Distal3.228833.90146K562KHSRP
chr5104276668104276782-intron-Distal4.520073.78533HepG2PTBP1
chr5104490827104490906-intron-Distal3.453963.47685K562EIF4G2
chr5104670289104670362-intron-Distal4.063948.64134K562SAFB2
chr5104584152104584215-intron-Distal4.289343.89294K562KHSRP
chr5104490965104491067-intron-Distal5.4401812.64183K562TARDBP
chr5104703016104703172-intron-Distal3.941777.69621K562KHSRP
chr5104721517104721571-intron-Distal3.211905.34873K562KHSRP
chr5104712134104712193-intron-Distal3.988793.74251K562SAFB2
chr5104670211104670289-intron-Distal3.340847.37797K562SAFB2
chr5104709331104709485-intron-Distal5.8452116.34654K562SAFB2
chr5104697782104697811-intron-Distal3.249733.15041K562EXOSC5
chr5104698447104698496-intron-Distal5.5086812.60442K562HNRNPM
chr5104698135104698204-intron-Distal4.6570911.88696K562HNRNPM
chr5104487774104487856-intron-Distal4.461474.56270K562SAFB2
chr5104540282104540349-intron-Distal3.723513.24603K562KHSRP
chr5104705951104706010-intron-Distal4.5618811.81487K562KHSRP
chr5104485459104485531-intron-Distal4.140924.48810K562SAFB2
chr5104537388104537431-intron-Distal4.064763.30696K562EXOSC5
chr5104490904104490956-intron-Distal4.888327.67146K562TARDBP
chr5104490850104490904-intron-Distal5.6504913.38631K562TARDBP
chr5104490961104491057-intron-Distal3.570024.98417K562EIF4G2
chr5104728447104728573-intron-Distal4.195514.82200K562LSM11
chr5104194367104194475-intron-Distal5.365516.40067K562PTBP1
chr5104540388104540441-intron-Distal3.779173.14791K562HNRNPL
chr5104706096104706144-intron-Distal4.499784.54401K562KHSRP
chr5104533889104533998-intron-Distal3.830506.49713K562KHDRBS1
chr5104711776104711840-intron-Distal3.451925.53469K562SAFB2
chr5104726388104726511-intron-Distal6.1817521.94681K562KHSRP
chr5104385044104385137-intron-Distal3.097193.46712K562SAFB2
chr5104434282104434358-intron-Distal4.120377.80454K562PTBP1
chr5104663986104664091-intron-Distal3.863464.51091HepG2HNRNPL
chr5104727601104727642-intron-Distal3.101553.28806K562KHSRP
chr5104431096104431170-intron-Distal3.643533.43875K562EXOSC5
chr5104590651104590705-intron-Distal6.0443711.61334K562PTBP1
chr5104667121104667245-intron-Distal3.613233.71597K562MATR3
chr5104705923104705951-intron-Distal3.246306.39618K562KHSRP
chr5104698887104698934-intron-Distal3.918093.45805K562KHSRP
chr5104516449104516519-intron-Distal3.170303.93901K562KHSRP
chr5104194356104194471-intron-Distal5.7645914.72968HepG2PTBP1
chr5104465659104465755-intron-Distal4.499735.58061HepG2SUGP2
chr5104335964104336039-intron-Distal4.124223.76460HepG2HNRNPL
chr5104667186104667255-intron-Distal4.8014715.72480K562PTBP1
chr5104440708104440823-intron-Distal4.853299.11780K562QKI
chr5104721044104721171-intron-Distal4.4288210.28391K562KHSRP
chr5104354890104354980-intron-Distal4.214823.41738HepG2PTBP1
chr5104537005104537042-intron-Distal5.053577.06230K562EXOSC5
chr5104590711104590746-intron-Distal4.865514.90095K562PTBP1
chr5104622800104622965-intron-Distal4.186937.90970K562KHSRP
chr5104430974104431019-intron-Distal3.706984.61282K562EXOSC5
chr5104328079104328199-intron-Distal6.4400013.16771K562QKI
chr5104698516104698591-intron-Distal6.1136916.65497K562EXOSC5
chr5104486365104486471-intron-Distal3.525325.15509K562SAFB2
chr5104709390104709458-intron-Distal4.283986.18516K562LARP4
chr5104276794104276873-intron-Distal5.027105.81225K562PTBP1
chr5104698190104698269-intron-Distal6.3094518.99984K562EXOSC5
chr5104534275104534373-intron-Distal4.757836.62732K562HNRNPM
chr5104486471104486563-intron-Distal4.026183.86679K562SAFB2
chr5104537260104537293-intron-Distal4.053573.01456K562EXOSC5
chr5104698315104698433-intron-Distal4.9128615.51032K562HNRNPM
chr5104634925104635035-intron-Distal3.093914.64757K562KHSRP
chr5104706074104706096-intron-Distal4.284944.10688K562KHSRP
chr5104721353104721417-intron-Distal3.512785.14864K562KHSRP
chr5104582254104582372-intron-Distal5.154866.90462K562PTBP1
chr5104453455104453529-intron-Distal3.641633.18722K562KHDRBS1
chr5104713970104714032-intron-Distal3.937023.86679K562SAFB2
chr5104584018104584109-intron-Distal3.530685.57010K562KHSRP
chr5104495775104495887-intron-Distal4.885678.62021K562HNRNPL
chr5104721571104721613-intron-Distal3.170303.68839K562KHSRP
chr5104696673104696753-intron-Distal4.156368.11145K562KHSRP
chr5104701999104702078-intron-Distal3.414824.70224K562KHSRP
chr5104713638104713699-intron-Distal4.051764.16015K562SAFB2
chr5104726550104726689-intron-Distal3.416833.32861HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-6N13.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-6N13.1 is not available on ENCORE database.

  • No RBPs affect the gene expression of RP11-6N13.1 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for RP11-6N13.1 is not available on ENCORE database.






No RBPs affect the gene expression of RP11-6N13.1 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for RP11-6N13.1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-6N13.1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-6N13.1 is not avaliable on ENCORE database.