RP11-255B23.4

General Information

Gene Name : RP11-255B23.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-255B23.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-255B23.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-255B23.4 RNA is bound by 18 proteins.

eCLIP assay for RP11-255B23.4 is not avaliable on ENCORE database.

18 proteins are bound to RP11-255B23.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	128208311	128208356	-	intron-Distal	3.32189	8.52200	HepG2	SUGP2
chr8	128214280	128214315	-	intron-Distal	5.18414	12.09955	HepG2	PRPF8
chr8	128210986	128211041	-	intron-Distal	4.40385	9.39277	HepG2	HNRNPK
chr8	128200289	128200355	-	intron-Distal,intron-Proximal	3.48085	7.67272	HepG2	QKI
chr8	128203900	128203982	-	intron-Distal	4.48091	13.14883	HepG2	HLTF
chr8	128204061	128204098	-	intron-Distal	4.46914	4.70478	HepG2	BCLAF1
chr8	128207619	128207685	-	intron-Distal	3.38339	7.38350	HepG2	HNRNPL
chr8	128208889	128208931	-	intron-Distal	4.13850	10.51675	HepG2	SUGP2
chr8	128210158	128210196	-	intron-Distal	3.69829	6.96174	HepG2	SUGP2
chr8	128208188	128208265	-	intron-Distal	3.96575	12.99693	HepG2	SUGP2
chr8	128211076	128211125	-	intron-Distal	3.07665	4.48153	HepG2	HNRNPK
chr8	128203874	128203903	-	intron-Distal	3.81749	4.37625	HepG2	RBM22
chr8	128202303	128202375	-	intron-Distal	4.01802	22.49804	HepG2	QKI
chr8	128210508	128210572	-	intron-Distal	3.80920	5.55877	HepG2	HNRNPL
chr8	128208595	128208687	-	intron-Distal	4.79356	29.51313	HepG2	SUGP2
chr8	128204223	128204272	-	intron-Distal	3.77137	9.02970	HepG2	HLTF
chr8	128208211	128208273	-	intron-Distal	3.94522	7.85325	HepG2	MATR3
chr8	128211006	128211136	-	intron-Distal	3.71133	6.20952	HepG2	MATR3
chr8	128199597	128199660	-	intron-Distal	3.25065	5.39438	HepG2	HNRNPC
chr8	128200317	128200353	-	intron-Distal	4.53957	14.87374	HepG2	U2AF2
chr8	128210275	128210321	-	intron-Distal	3.41810	9.44133	HepG2	SUGP2
chr8	128208223	128208258	-	intron-Distal	3.24884	4.40834	HepG2	QKI
chr8	128210054	128210104	-	intron-Distal	4.13164	10.05116	HepG2	SUGP2
chr8	128207630	128207743	-	intron-Distal	3.82629	21.81913	HepG2	SUGP2
chr8	128203840	128203900	-	intron-Distal	4.73883	10.94566	HepG2	HLTF
chr8	128203717	128203774	-	intron-Distal	3.30123	7.59125	HepG2	HLTF
chr8	128210610	128210690	-	intron-Distal	3.84799	14.56163	HepG2	HNRNPK
chr8	128204272	128204346	-	intron-Distal	4.60770	18.15174	HepG2	HLTF
chr8	128208015	128208119	-	intron-Distal	3.19358	6.01947	HepG2	MATR3
chr8	128203565	128203676	-	intron-Distal	3.25793	8.80715	HepG2	BCLAF1
chr8	128214051	128214113	-	intron-Distal	3.96998	13.06499	HepG2	SUGP2
chr8	128214401	128214460	-	intron-Distal	4.06550	3.98427	HepG2	SF3B4
chr8	128204346	128204392	-	intron-Distal	4.80300	11.85738	HepG2	HLTF
chr8	128215127	128215167	-	intron-Distal	3.33706	6.28047	HepG2	SUGP2
chr8	128200032	128200068	-	intron-Distal	3.75289	5.30777	HepG2	PPIG
chr8	128208025	128208095	-	intron-Distal	4.50006	9.78867	HepG2	QKI
chr8	128208727	128208790	-	intron-Distal	4.59417	23.74916	HepG2	SUGP2
chr8	128210730	128210817	-	intron-Distal	3.28478	9.02492	HepG2	PTBP1
chr8	128215317	128215386	-	intron-Distal	5.11632	7.37733	HepG2	TIAL1
chr8	128204047	128204099	-	intron-Distal	3.16550	8.22279	HepG2	HLTF
chr8	128200085	128200137	-	intron-Distal,intron-Proximal	3.32722	5.80032	HepG2	U2AF1
chr8	128209993	128210072	-	intron-Distal	3.67718	6.69182	HepG2	MATR3
chr8	128204156	128204223	-	intron-Distal	4.36812	19.23164	HepG2	HLTF
chr8	128207943	128208000	-	intron-Distal	5.32040	20.84074	HepG2	SUGP2
chr8	128206872	128206959	-	intron-Distal	3.27893	10.16885	HepG2	HLTF
chr8	128208971	128209056	-	intron-Distal	3.47440	10.97135	HepG2	SUGP2
chr8	128203542	128203609	-	intron-Distal	3.82672	13.27088	HepG2	HLTF
chr8	128200257	128200308	-	intron-Distal,intron-Proximal	3.55892	3.94654	HepG2	PRPF8
chr8	128200205	128200246	-	intron-Distal,intron-Proximal	3.10328	5.27624	HepG2	KHSRP
chr8	128210938	128211006	-	intron-Distal	3.57812	3.57598	HepG2	MATR3
chr8	128208455	128208511	-	intron-Distal	4.06296	4.02766	HepG2	HNRNPC
chr8	128214877	128214922	-	intron-Distal	3.62502	7.20487	HepG2	SUGP2
chr8	128207489	128207563	-	intron-Distal	3.05512	11.96621	HepG2	HNRNPL
chr8	128200090	128200142	-	intron-Distal,intron-Proximal	4.21136	29.27696	HepG2	U2AF2
chr8	128210922	128210979	-	intron-Distal	3.41235	9.15353	HepG2	HNRNPK
chr8	128209396	128209451	-	intron-Distal	3.04901	5.77752	HepG2	SUGP2
chr8	128207999	128208117	-	intron-Distal	3.19462	12.15205	HepG2	PTBP1
chr8	128214246	128214280	-	intron-Distal	3.46813	11.16708	HepG2	PRPF8
chr8	128207666	128207767	-	intron-Distal	3.11854	18.12784	HepG2	U2AF2
chr8	128211081	128211133	-	intron-Distal	3.38502	11.27662	HepG2	SUGP2
chr8	128208067	128208097	-	intron-Distal	3.49404	7.93215	HepG2	SUGP2
chr8	128208195	128208268	-	intron-Distal	4.51063	13.97042	HepG2	PTBP1
chr8	128214263	128214303	-	intron-Distal	3.53527	6.05394	HepG2	SUGP2
chr8	128199909	128199983	-	intron-Distal,intron-Proximal	3.63497	3.43841	HepG2	TIA1
chr8	128208440	128208516	-	intron-Distal	3.33351	12.34743	HepG2	SUGP2
chr8	128208291	128208370	-	intron-Distal	5.47044	13.58433	HepG2	QKI
chr8	128203474	128203535	-	intron-Distal	4.17446	11.91955	HepG2	HLTF
chr8	128198824	128198889	-	intron-Distal	3.56648	4.51074	HepG2	HNRNPL
chr8	128207952	128208015	-	intron-Distal	3.33285	4.53538	HepG2	MATR3
chr8	128209950	128210041	-	intron-Distal	4.15205	14.34218	HepG2	PTBP1
chr8	128207438	128207489	-	intron-Distal	4.17510	11.26927	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-255B23.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-255B23.4 is not available on ENCORE database.
15 RBPs can affect the levels of RP11-255B23.4.

The Knockdown/knockout RNA-Seq assay for RP11-255B23.4 is not available on ENCORE database.

15 RBPs can affect the gene expression of RP11-255B23.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-255B23.4	ENSG00000254166.1	67.68310	15.69070	2.10880	4.29960	3.34050	HepG2	CNOT7
RP11-255B23.4	ENSG00000254166.1	56.41410	8.15610	2.79000	6.43780	5.42010	HepG2	EIF4B
RP11-255B23.4	ENSG00000254166.1	24.05640	7.83840	1.61770	1.89470	1.33900	HepG2	G3BP1
RP11-255B23.4	ENSG00000254166.1	38.55060	13.23810	1.54200	2.77880	1.40280	HepG2	HNRNPA0
RP11-255B23.4	ENSG00000254166.1	25.25150	7.96580	1.66440	1.91830	1.34650	HepG2	IGF2BP2
RP11-255B23.4	ENSG00000254166.1	44.29720	14.92080	1.56980	3.13250	1.84660	HepG2	KHDRBS1
RP11-255B23.4	ENSG00000254166.1	41.87290	11.65800	1.84460	3.37650	2.45930	HepG2	LARP4
RP11-255B23.4	ENSG00000254166.1	44.03530	15.18920	1.53550	2.97350	1.48720	HepG2	NKRF
RP11-255B23.4	ENSG00000254166.1	25.92000	7.74470	1.74270	2.20130	1.55170	HepG2	PABPC4
RP11-255B23.4	ENSG00000254166.1	2.33420	15.39780	-2.72170	2.32420	1.77120	HepG2	PUF60
RP11-255B23.4	ENSG00000254166.1	48.05330	16.34250	1.55590	3.45220	2.80470	HepG2	PUM1
RP11-255B23.4	ENSG00000254166.1	47.44250	18.41900	1.36490	2.78710	2.26760	HepG2	RBM22
RP11-255B23.4	ENSG00000254166.1	44.34560	18.14910	1.28880	1.94380	1.35920	HepG2	RPLP0
RP11-255B23.4	ENSG00000254166.1	47.47560	14.23140	1.73800	3.00550	1.95410	HepG2	SRSF3
RP11-255B23.4	ENSG00000254166.1	2.65870	18.06380	-2.76430	2.83550	2.31820	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-255B23.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-255B23.4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RP11-255B23.4	ENSG00000254166.1	chr8	-	128214286	128214397			128200289	128200360	128215407	128215467	0.52200	0.00000	0.00043	included	HepG2	RBM22
MXE	RP11-255B23.4	ENSG00000254166.1	chr8	-	128200289	128200360	128214286	128214397	128200041	128200129	128215407	128215467	0.28900	0.00030	0.03366	1included	HepG2	RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-255B23.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-255B23.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-255B23.4 is not avaliable on ENCORE database.

18 proteins are bound to RP11-255B23.4 RNA:

eCLIP assay for RP11-255B23.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-255B23.4 is not available on ENCORE database.

15 RBPs can affect the gene expression of RP11-255B23.4 :

The Knockdown/knockout RNA-Seq assay for RP11-255B23.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-255B23.4 :

The Knockdown/knockout RNA-Seq assay for RP11-255B23.4 is not avaliable on ENCORE database.