RARB

General Information

Gene Name       : RARB
Gene ID             : ENSG00000077092.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RARB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RARBENSG00000077092.180.000.000.00ENCSR000AEF
HepG2RARBENSG00000077092.180.080.030.06ENCSR985KAT
K562RARBENSG00000077092.180.180.190.18ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RARB is not avaliable on ENCORE database.



Proteins bound to RNA
  • RARB RNA is bound by 7 proteins.  







eCLIP assay for RARB is not avaliable on ENCORE database.





7 proteins are bound to RARB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr32554074225540757+intron-Distal5.607734.48364K562DDX24
chr32550899425509034+intron-Distal6.6985910.28043HepG2TBRG4
chr32550898825509035+intron-Distal4.405523.97888HepG2HNRNPL
chr32550899125509035+intron-Distal4.4031822.08925HepG2DDX59
chr32554073025540742+intron-Distal5.607734.48364K562DDX24
chr32550898625509036+intron-Distal7.5791436.71862K562QKI
chr32550899025509034+intron-Distal4.462335.18391K562HNRNPL
chr32550899225509036+intron-Distal7.5509917.57118HepG2QKI
chr32550899225509032+intron-Distal4.7381911.63577K562AGGF1
chr32550899425509034+intron-Distal4.772433.72178K562DHX30
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RARB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RARB is not available on ENCORE database.

  • 16 RBPs can affect the levels of RARB.  








The Knockdown/knockout RNA-Seq assay for RARB is not available on ENCORE database.





16 RBPs can affect the gene expression of RARB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RARBENSG00000077092.1414.317501.791202.998601.938501.48420HepG2AKAP1
RARBENSG00000077092.147.850900.0000099999.999902.418901.69460HepG2CALR
RARBENSG00000077092.1417.709302.001503.145302.585101.80320HepG2PRPF8
RARBENSG00000077092.1418.575801.422103.707303.194102.44020HepG2RAVER1
RARBENSG00000077092.1420.628400.829204.636604.715404.08480HepG2RBM22
RARBENSG00000077092.1415.712401.979702.988402.151701.45070HepG2RRP9
RARBENSG00000077092.1417.072200.936104.188703.473802.93200HepG2SRFBP1
RARBENSG00000077092.1413.973001.662103.071502.395101.80840HepG2SUCLG1
RARBENSG00000077092.1431.672309.368601.757202.427801.44330K562CNOT7
RARBENSG00000077092.1441.085107.187502.515005.152603.88500K562EFTUD2
RARBENSG00000077092.1417.343904.201002.045502.112201.46970K562EIF2S2
RARBENSG00000077092.1456.366405.607703.329308.028306.72860K562GRSF1
RARBENSG00000077092.1433.890803.644203.217105.348704.54380K562HNRNPC
RARBENSG00000077092.1432.141709.563501.748702.906601.82050K562HNRNPL
RARBENSG00000077092.1462.471706.994003.158908.728107.39230K562PRPF8
RARBENSG00000077092.1429.272804.345802.751803.747202.60700K562SF3B1
RARBENSG00000077092.1425.851806.780701.930702.471601.51690K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RARB is not available on ENCORE database.






No RBPs affect the alternative splcing events of RARB on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RARB is not avaliable on ENCORE database.