PRKCH

General Information

Gene Name       : PRKCH
Gene ID             : ENSG00000027075.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKCH)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKCHENSG00000027075.1428.6123.2625.94ENCSR000AEF
HepG2PRKCHENSG00000027075.140.610.450.53ENCSR985KAT
K562PRKCHENSG00000027075.142.952.912.93ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKCH is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKCH RNA is bound by 1 proteins.  







eCLIP assay for PRKCH is not avaliable on ENCORE database.





1 proteins are bound to PRKCH RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146187623761876246+intron-Distal6.0974514.83075K562DDX3X
chr146187624661876261+intron-Distal6.0974514.83075K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKCH is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKCH is not available on ENCORE database.

  • 30 RBPs can affect the levels of PRKCH.  








The Knockdown/knockout RNA-Seq assay for PRKCH is not available on ENCORE database.





30 RBPs can affect the gene expression of PRKCH :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKCHENSG00000027075.938.530206.711502.521204.016003.39210HepG2AKAP1
PRKCHENSG00000027075.937.162005.554402.742005.053504.00710HepG2ASCC1
PRKCHENSG00000027075.923.683806.431601.880602.059101.51030HepG2DDX3X
PRKCHENSG00000027075.956.9225018.689201.606703.547302.83090HepG2GPKOW
PRKCHENSG00000027075.947.072006.094602.949204.582203.77820HepG2NCBP2
PRKCHENSG00000027075.924.595406.500201.919702.402401.82740HepG2PCBP1
PRKCHENSG00000027075.921.023506.619901.667001.878001.41030HepG2PTBP1
PRKCHENSG00000027075.9128.5808019.502402.7209017.6401016.03870HepG2PUM2
PRKCHENSG00000027075.932.0384012.758901.328202.019201.47390HepG2PUS1
PRKCHENSG00000027075.941.2952014.191101.540902.818801.95510HepG2RBM15
PRKCHENSG00000027075.958.2267027.015701.107802.297401.66660HepG2RPLP0
PRKCHENSG00000027075.942.372407.187502.559505.276304.67650HepG2SRSF1
PRKCHENSG00000027075.940.4905014.057601.526102.601901.99190HepG2U2AF1
PRKCHENSG00000027075.962.15230158.83550-1.353706.107405.29400K562AQR
PRKCHENSG00000027075.934.4421073.30900-1.089802.637501.78620K562BOP1
PRKCHENSG00000027075.9181.55490279.98950-0.625003.272902.21240K562CELF1
PRKCHENSG00000027075.957.51810113.83020-0.984803.367602.58670K562EIF2S2
PRKCHENSG00000027075.981.16850133.64530-0.719402.723901.59230K562GLRX3
PRKCHENSG00000027075.985.92850151.72460-0.820202.148801.47750K562GRSF1
PRKCHENSG00000027075.944.96910118.80350-1.401604.173003.45520K562HNRNPC
PRKCHENSG00000027075.9120.04810242.70490-1.015605.920104.27850K562MSI2
PRKCHENSG00000027075.981.32180140.50890-0.788903.347702.46170K562MTPAP
PRKCHENSG00000027075.966.49370110.54570-0.733402.019401.30980K562PCBP3
PRKCHENSG00000027075.981.20010140.82970-0.794403.239602.32370K562RBM22
PRKCHENSG00000027075.984.51420154.04380-0.866103.976303.00850K562SF3A3
PRKCHENSG00000027075.954.9926094.11870-0.775202.451301.64810K562SF3B4
PRKCHENSG00000027075.965.61730122.71100-0.903103.199301.83560K562STAU1
PRKCHENSG00000027075.980.80170145.76380-0.851203.528502.72620K562TARDBP
PRKCHENSG00000027075.959.76630165.54470-1.469809.898808.64580K562UPF1
PRKCHENSG00000027075.9102.14180188.18850-0.881604.562502.89680K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKCH is not available on ENCORE database.






No RBPs affect the alternative splcing events of PRKCH on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PRKCH is not avaliable on ENCORE database.