PMS2P1

General Information

Gene Name       : PMS2P1
Gene ID             : ENSG00000078319.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PMS2P1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PMS2P1ENSG00000078319.915.9213.8514.88ENCSR000AEF
HepG2PMS2P1ENSG00000078319.95.706.516.11ENCSR985KAT
K562PMS2P1ENSG00000078319.914.6216.5415.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PMS2P1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PMS2P1 RNA is bound by 9 proteins.  







eCLIP assay for PMS2P1 is not avaliable on ENCORE database.





9 proteins are bound to PMS2P1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79992840499928415-intron-Distal6.2776437.63409K562TIA1
chr79992840299928404-intron-Distal6.2776437.63409K562TIA1
chr79992841099928441-intron-Distal6.5414314.03226HepG2TROVE2
chr79992638699926459-intron-Distal4.038679.41329K562AQR
chr79992841599928429-intron-Distal6.2776437.63409K562TIA1
chr79992477399924837-intron-Distal5.659536.88699HepG2XPO5
chr79992840199928411-intron-Distal5.4837311.69221K562IGF2BP1
chr79992652299926598-intron-Distal3.080147.60260K562ZNF622
chr79992634499926386-intron-Distal3.888893.79442K562AQR
chr79992840199928410-intron-Distal6.5414314.03226HepG2TROVE2
chr79993349499933552-intron-Distal5.3035310.09716K562DDX3X
chr79992646199926514-intron-Distal3.197465.39278K562ZNF622
chr79992840499928440-intron-Distal7.3485283.97720K562TROVE2
chr79993342699933462-intron-Distal,intron-Proximal5.416118.83608K562AQR
chr79993009899930167-intron-Distal3.725084.49347K562UCHL5
chr79992841199928435-intron-Distal5.5140012.15172K562IGF2BP1
chr79993345699933494-intron-Distal,intron-Proximal4.379539.77030K562DDX3X
chr79991933699919419-intron-Distal4.115896.69896K562KHDRBS1
chr79992839999928404-intron-Distal7.3229982.64349K562TROVE2
chr79993341599933426-intron-Distal,intron-Proximal4.344187.50107K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PMS2P1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PMS2P1 is not available on ENCORE database.

  • 17 RBPs can affect the levels of PMS2P1.  








The Knockdown/knockout RNA-Seq assay for PMS2P1 is not available on ENCORE database.





17 RBPs can affect the gene expression of PMS2P1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PMS2P1ENSG00000078319.7123.5821059.714401.049203.241502.67160HepG2AKAP1
PMS2P1ENSG00000078319.740.0613079.98270-0.997502.698602.10910HepG2PUF60
PMS2P1ENSG00000078319.776.6123042.925700.835602.234501.64670HepG2SMN1
PMS2P1ENSG00000078319.7477.05150283.051500.753005.466504.71170K562AGGF1
PMS2P1ENSG00000078319.7404.37370294.524600.457202.535001.90880K562AKAP8L
PMS2P1ENSG00000078319.7258.60810399.22740-0.626403.531402.88430K562AQR
PMS2P1ENSG00000078319.7419.53890309.020900.441002.869401.94050K562ATP5C1
PMS2P1ENSG00000078319.7117.97900192.02800-0.702802.769601.35550K562BUD13
PMS2P1ENSG00000078319.774.99030129.02730-0.782902.760301.43280K562DHX30
PMS2P1ENSG00000078319.7147.02340227.23300-0.628103.079702.21510K562EIF4A3
PMS2P1ENSG00000078319.7123.76020183.81800-0.570702.033101.51070K562HNRNPC
PMS2P1ENSG00000078319.7497.67970312.575900.670905.113803.92340K562KIF1C
PMS2P1ENSG00000078319.7452.39430245.437400.882102.873901.97240K562NAA15
PMS2P1ENSG00000078319.7360.25740530.89460-0.559403.734702.79010K562PUF60
PMS2P1ENSG00000078319.7623.15940292.111601.0930011.8172010.74230K562PUS1
PMS2P1ENSG00000078319.7473.66070284.598800.734803.488102.83470K562RBM15
PMS2P1ENSG00000078319.7164.50270240.94200-0.550602.641401.82150K562RBM22
PMS2P1ENSG00000078319.7175.20910246.32350-0.491502.195701.55740K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PMS2P1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PMS2P1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PMS2P1 is not avaliable on ENCORE database.