CTC-554D6.1

General Information

Gene Name : CTC-554D6.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-554D6.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-554D6.1 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-554D6.1 RNA is bound by 14 proteins.

eCLIP assay for CTC-554D6.1 is not avaliable on ENCORE database.

14 proteins are bound to CTC-554D6.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	112198246	112198380	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.79620	6.08664	K562	BUD13
chr5	112198232	112198380	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74618	6.32052	K562	AQR
chr5	112203053	112203117	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.56661	4.79708	HepG2	U2AF2
chr5	112198215	112198278	+	3'-UTR,CDS,intron-Distal	3.00587	3.06971	K562	YBX3
chr5	112198204	112198269	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28520	7.35825	K562	DDX3X
chr5	112197017	112197111	+	5'-UTR,CDS,intron-Distal	5.16173	4.38825	K562	DROSHA
chr5	112197054	112197119	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.04889	6.89039	K562	RBM15
chr5	112179902	112179981	+	3'-UTR,intron-Distal	5.19908	6.34419	K562	PUM2
chr5	112174977	112175021	+	3'-UTR,CDS,intron-Distal	3.85787	3.11168	K562	ZNF622
chr5	112197016	112197064	+	5'-UTR,intron-Distal	5.10024	6.15796	HepG2	DDX3X
chr5	112175148	112175212	+	3'-UTR,CDS,intron-Distal	3.48236	4.06757	K562	UCHL5
chr5	112177866	112177981	+	3'-UTR,CDS,intron-Distal	3.24632	3.55860	K562	SAFB2
chr5	112175134	112175179	+	3'-UTR,CDS,intron-Distal	3.20579	3.31745	K562	ZNF622
chr5	112197101	112197174	+	CDS,intron-Distal,intron-Proximal	5.09325	5.68502	HepG2	PRPF8
chr5	112175552	112175594	+	3'-UTR,CDS,intron-Distal	3.86937	3.67607	K562	YBX3
chr5	112197073	112197115	+	CDS,intron-Distal,intron-Proximal	4.87399	19.42045	K562	DDX3X
chr5	112197011	112197073	+	5'-UTR,intron-Distal	4.65203	21.03966	K562	DDX3X
chr5	112177929	112178011	+	3'-UTR,CDS,intron-Distal	3.93650	3.26547	HepG2	HLTF
chr5	112176964	112177037	+	3'-UTR,CDS,intron-Distal	4.27685	5.43239	K562	YBX3
chr5	112174941	112175017	+	3'-UTR,CDS,intron-Distal	4.37282	3.38968	HepG2	BCLAF1
chr5	112180562	112180630	+	3'-UTR,intron-Distal	4.80010	5.82129	K562	PUM2
chr5	112175789	112175859	+	3'-UTR,CDS,intron-Distal	4.15197	3.73331	K562	RBM15
chr5	112177101	112177147	+	3'-UTR,CDS,intron-Distal	3.90053	3.32022	K562	UCHL5
chr5	112174957	112175004	+	3'-UTR,CDS,intron-Distal	3.33178	3.73423	K562	UCHL5
chr5	112198280	112198337	+	intron-Distal,intron-Proximal	3.87954	4.75655	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-554D6.1 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for CTC-554D6.1 is not available on ENCORE database.
No RBPs affect the gene expression of CTC-554D6.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTC-554D6.1 is not available on ENCORE database.

No RBPs affect the gene expression of CTC-554D6.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTC-554D6.1 is not available on ENCORE database.

16 RBPs can affect the splicing of CTC-554D6.1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.06500	0.00000	0.00000	longer	HepG2	SF3A3
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.06500	0.00000	0.00138	shorter	HepG2	AKAP1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.08600	0.00001	0.00113	longer	K562	AKAP8L
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.06600	0.00000	0.00217	shorter	HepG2	MATR3
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.11200	0.00000	0.00000	shorter	K562	U2AF2
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.12300	0.00000	0.00047	shorter	K562	FXR1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.06500	0.00000	0.00000	shorter	K562	HNRNPM
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.19900	0.00000	0.00001	longer	K562	SF3B4
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.08400	0.00000	0.00000	longer	K562	HNRNPUL1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.08000	0.00001	0.00123	longer	K562	PUS1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.06200	0.00052	0.07292	longer	K562	UTP18
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.05300	0.00023	0.03940	longer	K562	SF3B1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.12900	0.00014	0.02970	longer	K562	PTBP1
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	0.10200	0.00000	0.00008	longer	K562	RBM15
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200317	112200429	-0.06900	0.00000	0.00522	shorter	K562	WDR43
A3SS	CTC-554D6.1	ENSG00000258864.1	chr5	+	112203068	112203279			112203100	112203279	112200337	112200429	0.09100	0.00040	0.03454	longer	HepG2	SF3B4
MXE	CTC-554D6.1	ENSG00000258864.1	chr5	+	112200130	112200225	112200317	112200429	112198204	112198280	112203100	112203279	0.06900	0.00000	0.00000	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-554D6.1

General Information

Functions

Localization

Domains (AlphaFold: CTC-554D6.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-554D6.1 is not avaliable on ENCORE database.

14 proteins are bound to CTC-554D6.1 RNA:

eCLIP assay for CTC-554D6.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-554D6.1 is not available on ENCORE database.

No RBPs affect the gene expression of CTC-554D6.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTC-554D6.1 is not available on ENCORE database.

16 RBPs can affect the splicing of CTC-554D6.1 :

The Knockdown/knockout RNA-Seq assay for CTC-554D6.1 is not avaliable on ENCORE database.