CTC-301O7.4

General Information

Gene Name       : CTC-301O7.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTC-301O7.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC-301O7.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTC-301O7.4 RNA is bound by 10 proteins.  







eCLIP assay for CTC-301O7.4 is not avaliable on ENCORE database.





10 proteins are bound to CTC-301O7.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194984177949841834-intron-Distal4.763076.32269K562CSTF2T
chr194984201749842066-intron-Distal3.008094.53878K562CSTF2T
chr194984330049843388-intron-Distal3.819113.02936K562HNRNPU
chr194984132349841389-intron-Distal3.150245.23161K562TIA1
chr194984329149843385-intron-Distal4.4356410.57219K562CSTF2T
chr194983990349839992-intron-Distal3.658343.26015K562PTBP1
chr194984215349842215-intron-Distal3.392077.57387HepG2CSTF2T
chr194984356049843588-intron-Distal,intron-Proximal4.350095.01722K562CSTF2T
chr194984089349840987-intron-Distal4.448045.63677K562PTBP1
chr194984145949841505-intron-Distal4.811513.62726K562DROSHA
chr194984217249842216-intron-Distal3.407963.73797K562CSTF2T
chr194984127649841333-intron-Distal5.002866.32277HepG2CSTF2T
chr194984128749841335-intron-Distal3.470154.06897HepG2FAM120A
chr194984332249843396-intron-Distal4.947987.56775K562EWSR1
chr194984168949841734-intron-Distal5.131618.83237HepG2CSTF2T
chr194984293649842974-intron-Distal4.678596.32277HepG2CSTF2T
chr194984221549842271-intron-Distal4.5799911.80524HepG2CSTF2T
chr194984176649841841-intron-Distal3.190446.77715HepG2FAM120A
chr194984264449842701-intron-Distal4.726686.36475K562CSTF2T
chr194984125449841402-intron-Distal3.185805.88982K562FAM120A
chr194984332649843398-intron-Distal3.853936.00449HepG2FAM120A
chr194984311249843163-intron-Distal3.857399.33519HepG2CSTF2T
chr194984264449842714-intron-Distal4.9001515.84039HepG2CSTF2T
chr194984148649841525-intron-Distal3.683894.84557HepG2CSTF2T
chr194984133349841407-intron-Distal4.1400010.77465K562CSTF2T
chr194984128049841400-intron-Distal4.460424.14527K562SLTM
chr194984285949842911-intron-Distal4.420135.28165K562CSTF2T
chr194984265149842712-intron-Distal4.437244.16830K562EWSR1
chr194983819549838343-intron-Distal3.941716.14899HepG2PCBP2
chr194984354949843599-intron-Distal,intron-Proximal4.094417.23771HepG2CSTF2T
chr194984355449843607-intron-Distal,intron-Proximal3.464414.33898HepG2FAM120A
chr194984126149841333-intron-Distal5.4267312.33690K562CSTF2T
chr194984274849842807-intron-Distal3.609589.32095HepG2CSTF2T
chr194984200649842072-intron-Distal3.704569.78761HepG2CSTF2T
chr194984331649843403-intron-Distal5.7617813.08639HepG2CSTF2T
chr194984162049841752-intron-Distal4.8259815.50560K562CSTF2T
chr194984331849843388-intron-Distal4.798775.54520K562GTF2F1
chr194984133349841386-intron-Distal5.151519.85717HepG2CSTF2T
chr194984169049841765-intron-Distal3.694657.96636HepG2FAM120A
chr194984375749843798-intron-Distal,intron-Proximal4.477545.36332HepG2CSTF2T
chr194984286349842911-intron-Distal3.568996.28777HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC-301O7.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC-301O7.4 is not available on ENCORE database.

  • 8 RBPs can affect the levels of CTC-301O7.4.  








The Knockdown/knockout RNA-Seq assay for CTC-301O7.4 is not available on ENCORE database.





8 RBPs can affect the gene expression of CTC-301O7.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC-301O7.4ENSG00000197813.429.232203.944402.889604.010503.18380HepG2HNRNPK
CTC-301O7.4ENSG00000197813.40.954509.87930-3.371502.098801.56310HepG2HNRNPU
CTC-301O7.4ENSG00000197813.478.9065011.365002.7955010.440809.57770HepG2RBM22
CTC-301O7.4ENSG00000197813.415.891802.560902.633502.163901.63160HepG2SF3B4
CTC-301O7.4ENSG00000197813.448.7467012.834701.925203.287202.75600HepG2SRFBP1
CTC-301O7.4ENSG00000197813.417.469002.174503.006003.235302.64790HepG2SRSF9
CTC-301O7.4ENSG00000197813.429.454807.965701.886502.468901.90120K562HNRNPC
CTC-301O7.4ENSG00000197813.435.7050011.599901.621902.690701.98140K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC-301O7.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTC-301O7.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTC-301O7.4 is not avaliable on ENCORE database.