CA5B

General Information

Gene Name       : CA5B
Gene ID             : ENSG00000169239.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CA5B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CA5BENSG00000169239.123.312.632.97ENCSR000AEF
HepG2CA5BENSG00000169239.121.202.051.62ENCSR985KAT
K562CA5BENSG00000169239.121.471.721.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CA5B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CA5B RNA is bound by 5 proteins.  







eCLIP assay for CA5B is not avaliable on ENCORE database.





5 proteins are bound to CA5B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1571879115718856+intron-Distal3.605533.01412K562SAFB2
chrX1571899215719091+intron-Distal4.905888.50955K562QKI
chrX1572140615721473+intron-Distal4.557215.43239K562YBX3
chrX1571715015717208+intron-Distal3.695093.08967K562KHDRBS1
chrX1571441915714521+intron-Distal3.245363.69083K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CA5B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CA5B is not available on ENCORE database.

  • 11 RBPs can affect the levels of CA5B.  








The Knockdown/knockout RNA-Seq assay for CA5B is not available on ENCORE database.





11 RBPs can affect the gene expression of CA5B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CA5BENSG00000169239.8117.3198063.049000.895802.938802.27910HepG2EIF4A3
CA5BENSG00000169239.8169.50890102.093100.731403.403702.74660HepG2ETF1
CA5BENSG00000169239.8106.3232063.607500.741102.016101.45230HepG2MAGOH
CA5BENSG00000169239.8145.3168083.678100.796203.509302.94740HepG2SSB
CA5BENSG00000169239.8127.9046065.130700.973603.974603.32160HepG2TAF15
CA5BENSG00000169239.851.9204090.75990-0.805802.376301.72100HepG2UPF1
CA5BENSG00000169239.856.2266099.81840-0.828102.835102.28340HepG2ZNF622
CA5BENSG00000169239.8169.25350111.178600.606202.610801.97530K562DDX47
CA5BENSG00000169239.8117.1106062.062200.916003.349902.45060K562EIF4A3
CA5BENSG00000169239.8103.1136056.122200.877503.075702.17260K562SF3B4
CA5BENSG00000169239.8102.5681052.313100.971203.060501.90010K562U2AF1
CA5BENSG00000169239.8104.6720054.035900.953802.888902.06850K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CA5B is not available on ENCORE database.






No RBPs affect the alternative splcing events of CA5B on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CA5B is not avaliable on ENCORE database.