ZXDC

General Information

Gene Name : ZXDC
Gene ID : ENSG00000070476.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZXDC)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZXDC	ENSG00000070476.14	3.63	6.03	4.83	ENCSR000AEF
HepG2	ZXDC	ENSG00000070476.14	14.63	12.58	13.61	ENCSR985KAT
K562	ZXDC	ENSG00000070476.14	6.22	5.02	5.62	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	ZXDC-BGRSLV08-RS293		ZXDC	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZXDC	Ribo-STAMP-293T	shRNA			BGRSLV08-59,BGRSLV08-60	BGRSLV08-1,BGRSLV08-2		NotSatisfied	ENCORE2
ZXDC	Ribo-STAMP-293T	shRNA			ZXDC-BGRSLV08-61,ZXDC-BGRSLV08-62	NT-BGRSLV08-1,NT-BGRSLV08-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZXDC is not avaliable on ENCORE database.

Proteins bound to RNA

ZXDC RNA is bound by 24 proteins.

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eCLIP assay for ZXDC is not avaliable on ENCORE database.

24 proteins are bound to ZXDC RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	126165450	126165582	-	intron-Distal	6.05446	58.56456	HepG2	QKI
chr3	126178437	126178525	-	CDS,intron-Distal,intron-Proximal	4.34278	27.92654	HepG2	PRPF8
chr3	126160559	126160640	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.60015	11.43193	HepG2	PRPF8
chr3	126180335	126180410	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.15680	9.70941	HepG2	PRPF8
chr3	126168795	126168855	-	intron-Distal	3.59635	9.07592	HepG2	HNRNPM
chr3	126176828	126176876	-	intron-Distal	3.96056	8.65817	HepG2	HNRNPM
chr3	126158532	126158583	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.33285	7.64877	HepG2	U2AF2
chr3	126157248	126157305	-	3'-UTR,CDS,intron-Distal	3.58468	7.61685	HepG2	PPIG
chr3	126159573	126159670	-	intron-Distal	4.97755	7.45950	HepG2	PRPF4
chr3	126190818	126190875	-	CDS,intron-Distal	3.58468	6.81103	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 52 entries

eCLIP assay for ZXDC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZXDC is not available on ENCORE database.
45 RBPs can affect the levels of ZXDC.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZXDC is not available on ENCORE database.

45 RBPs can affect the gene expression of ZXDC :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZXDC	ENSG00000070476.10	319.60490	680.84110	-1.09100	13.36070	12.21190	K562	PUS1
ZXDC	ENSG00000070476.10	293.48390	522.75470	-0.83290	10.61100	9.48700	HepG2	HNRNPU
ZXDC	ENSG00000070476.10	371.59990	663.38500	-0.83610	10.42250	9.29540	K562	RBM15
ZXDC	ENSG00000070476.10	1342.17770	723.03540	0.89230	10.24430	9.03320	HepG2	EIF4A3
ZXDC	ENSG00000070476.10	1326.95310	927.20250	0.51710	8.77130	7.95820	HepG2	SSB
ZXDC	ENSG00000070476.10	408.48110	659.77900	-0.69170	8.17490	7.27000	K562	AGGF1
ZXDC	ENSG00000070476.10	412.97290	686.53130	-0.73330	7.31590	6.20780	K562	AKAP8L
ZXDC	ENSG00000070476.10	431.82460	728.57650	-0.75460	7.52470	5.99980	K562	KIF1C
ZXDC	ENSG00000070476.10	1051.89470	697.37630	0.59290	6.85850	5.83690	HepG2	RBM25
ZXDC	ENSG00000070476.10	513.94080	736.36190	-0.51880	6.66950	5.71880	HepG2	CKAP4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZXDC is not available on ENCORE database.

2 RBPs can affect the splicing of ZXDC :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	ZXDC	ENSG00000070476.10	chr3	-	126189737	126189956			126189737	126189868	126190815	126190894	0.21000	0.00000	0.00000	longer	K562	AQR
SE	ZXDC	ENSG00000070476.10	chr3	-	126184997	126185168			126180112	126181063	126189737	126189868	-0.24900	0.00462	0.04990	excluded	HepG2	U2AF2

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZXDC

General Information

Functions

Localization

Domains (AlphaFold: ZXDC)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZXDC is not avaliable on ENCORE database.

24 proteins are bound to ZXDC RNA:

eCLIP assay for ZXDC is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZXDC is not available on ENCORE database.

45 RBPs can affect the gene expression of ZXDC :

The Knockdown/knockout RNA-Seq assay for ZXDC is not available on ENCORE database.

2 RBPs can affect the splicing of ZXDC :

The Knockdown/knockout RNA-Seq assay for ZXDC is not avaliable on ENCORE database.