VHL

General Information

Gene Name : VHL
Gene ID : ENSG00000134086.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VHL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VHL	ENSG00000134086.7	34.01	31.91	32.96	ENCSR000AEF
HepG2	VHL	ENSG00000134086.7	31.58	45.86	38.72	ENCSR985KAT
K562	VHL	ENSG00000134086.7	53.12	56.59	54.86	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VHL is not avaliable on ENCORE database.

Proteins bound to RNA

VHL RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for VHL is not avaliable on ENCORE database.

20 proteins are bound to VHL RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	10192792	10192874	+	3'-UTR	4.98943	75.98561	K562	AKAP1
chr3	10193646	10193729	+	3'-UTR	5.50078	63.29751	K562	UPF1
chr3	10193596	10193646	+	3'-UTR	4.74767	56.07815	K562	UPF1
chr3	10192670	10192720	+	3'-UTR	4.78875	50.49699	K562	UPF1
chr3	10192657	10192742	+	3'-UTR	7.70326	50.49178	HepG2	UPF1
chr3	10191848	10191907	+	3'-UTR	5.53693	49.88885	K562	LIN28B
chr3	10193437	10193460	+	3'-UTR	4.06103	46.92581	K562	UPF1
chr3	10193408	10193437	+	3'-UTR	3.65718	46.02382	K562	UPF1
chr3	10192492	10192565	+	3'-UTR	4.04982	45.42111	K562	PUM2
chr3	10192890	10192957	+	3'-UTR	4.92662	45.15206	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 91 entries

eCLIP assay for VHL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VHL is not available on ENCORE database.
76 RBPs can affect the levels of VHL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VHL is not available on ENCORE database.

76 RBPs can affect the gene expression of VHL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VHL	ENSG00000134086.7	3380.13950	7062.25300	-1.06300	44.49580	42.01870	K562	RBM15
VHL	ENSG00000134086.7	3196.43510	7248.21080	-1.18120	32.48770	30.60050	K562	PUS1
VHL	ENSG00000134086.7	4193.86600	7668.51260	-0.87070	31.40780	28.15670	K562	ATP5C1
VHL	ENSG00000134086.7	825.12410	1644.91420	-0.99530	20.53300	18.00910	HepG2	TUFM
VHL	ENSG00000134086.7	1156.85730	1901.71630	-0.71710	17.78530	16.62670	HepG2	PTBP1
VHL	ENSG00000134086.7	4195.76980	7308.64130	-0.80070	15.85050	14.06100	K562	AKAP8L
VHL	ENSG00000134086.7	4719.57840	7023.86260	-0.57360	14.31030	13.12270	K562	AGGF1
VHL	ENSG00000134086.7	1417.91160	2116.45050	-0.57790	12.49800	11.50270	HepG2	NELFE
VHL	ENSG00000134086.7	672.83110	1207.59810	-0.84380	11.61210	9.02310	HepG2	ATP5C1
VHL	ENSG00000134086.7	1502.62610	915.06640	0.71540	9.20850	7.99450	HepG2	SF3B1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VHL is not available on ENCORE database.

13 RBPs can affect the splicing of VHL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188360	-0.28500	0.00000	0.00001	excluded	K562	SRSF1
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	0.32700	0.00000	0.00000	included	K562	PUS1
SE	VHL	ENSG00000134086.7	chr3	+	10188197	10188320			10184229	10184705	10191470	10191829	-0.10200	0.00000	0.00000	excluded	K562	PUS1
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	-0.18100	0.00000	0.00001	excluded	K562	EIF4G2
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	0.15500	0.00000	0.00012	included	K562	RBM15
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	0.21700	0.00000	0.00000	included	K562	AGGF1
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	0.13300	0.00001	0.00049	included	K562	AKAP8L
SE	VHL	ENSG00000134086.7	chr3	+	10188197	10188320			10184229	10184705	10191470	10191829	-0.07700	0.00002	0.00043	excluded	K562	AQR
SE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705			10182691	10183871	10188197	10188320	0.32600	0.00004	0.00334	included	K562	HNRNPK
MXE	VHL	ENSG00000134086.7	chr3	+	10184644	10184705	10188197	10188360	10182691	10183871	10191470	10191829	0.14600	0.00011	0.00135	1included	K562	AQR

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VHL

General Information

Functions

Localization

Domains (AlphaFold: VHL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VHL is not avaliable on ENCORE database.

20 proteins are bound to VHL RNA:

eCLIP assay for VHL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VHL is not available on ENCORE database.

76 RBPs can affect the gene expression of VHL :

The Knockdown/knockout RNA-Seq assay for VHL is not available on ENCORE database.

13 RBPs can affect the splicing of VHL :

The Knockdown/knockout RNA-Seq assay for VHL is not avaliable on ENCORE database.