TBPL1

General Information

Gene Name : TBPL1
Gene ID : ENSG00000028839.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBPL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBPL1	ENSG00000028839.9	24.57	23.58	24.07	ENCSR000AEF
HepG2	TBPL1	ENSG00000028839.9	19.82	30.51	25.16	ENCSR985KAT
K562	TBPL1	ENSG00000028839.9	86.13	66.75	76.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBPL1 is not avaliable on ENCORE database.

Proteins bound to RNA

TBPL1 RNA is bound by 25 proteins.

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eCLIP assay for TBPL1 is not avaliable on ENCORE database.

25 proteins are bound to TBPL1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	134277448	134277556	+	intron-Distal	4.83135	30.74713	K562	CSTF2T
chr6	134277452	134277537	+	intron-Distal	6.10388	27.87055	K562	FMR1
chr6	134308292	134308383	+	3'-UTR	3.51784	20.00678	K562	PUM2
chr6	134308029	134308113	+	CDS,intron-Proximal	4.12471	15.02134	K562	SF3B4
chr6	134274649	134274774	+	intron-Distal,intron-Proximal	4.53397	15.00354	K562	GTF2F1
chr6	134274803	134274862	+	intron-Distal	4.72431	11.30843	K562	GTF2F1
chr6	134297727	134297833	+	intron-Distal	4.97463	10.89911	K562	QKI
chr6	134274639	134274763	+	intron-Distal,intron-Proximal	4.18005	9.35150	HepG2	FAM120A
chr6	134301468	134301552	+	intron-Distal,intron-Proximal	3.69911	9.14595	K562	PRPF8
chr6	134305728	134305775	+	CDS,intron-Distal	4.02429	8.57807	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 39 entries

eCLIP assay for TBPL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBPL1 is not available on ENCORE database.
53 RBPs can affect the levels of TBPL1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TBPL1 is not available on ENCORE database.

53 RBPs can affect the gene expression of TBPL1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBPL1	ENSG00000028839.5	390.76450	1024.85500	-1.39100	28.07990	24.61780	K562	HNRNPF
TBPL1	ENSG00000028839.5	793.57380	400.18670	0.98760	16.26980	15.22440	HepG2	RBM22
TBPL1	ENSG00000028839.5	807.86100	451.99390	0.83770	14.69780	13.78520	HepG2	SRFBP1
TBPL1	ENSG00000028839.5	814.37430	361.11210	1.17310	12.72870	11.67410	HepG2	AKAP1
TBPL1	ENSG00000028839.5	1191.21750	1681.27680	-0.49710	11.57820	10.19420	K562	NSUN2
TBPL1	ENSG00000028839.5	219.44720	392.43360	-0.83860	8.48150	7.67970	HepG2	SSB
TBPL1	ENSG00000028839.5	376.44180	209.22590	0.84730	7.83710	6.91160	HepG2	UTP3
TBPL1	ENSG00000028839.5	2890.30040	1934.50990	0.57920	7.77370	6.45710	K562	HSPD1
TBPL1	ENSG00000028839.5	489.20460	266.12540	0.87820	7.39550	6.37460	HepG2	U2AF1
TBPL1	ENSG00000028839.5	633.18270	938.94270	-0.56840	6.39580	4.88840	K562	RCC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBPL1 is not available on ENCORE database.

3 RBPs can affect the splicing of TBPL1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TBPL1	ENSG00000028839.5	chr6	+	134305714	134305809	134305513	134305617	134308098	134311570	-0.07800	0.00000	0.00000	excluded	K562	AQR
SE	TBPL1	ENSG00000028839.5	chr6	+	134289992	134290095	134274361	134274563	134301219	134301398	0.10300	0.00000	0.00139	included	K562	KHSRP
A3SS	TBPL1	ENSG00000028839.5	chr6	+	134303688	134303788	134303705	134303788	134301169	134301398	0.13100	0.00000	0.00000	longer	K562	AQR
SE	TBPL1	ENSG00000028839.5	chr6	+	134303680	134303788	134301169	134301398	134303954	134304018	-0.05100	0.00001	0.00014	excluded	K562	AQR
SE	TBPL1	ENSG00000028839.5	chr6	+	134303688	134303788	134301219	134301398	134303954	134304010	-0.09300	0.00002	0.00084	excluded	K562	SF3B4

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBPL1

General Information

Functions

Localization

Domains (AlphaFold: TBPL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBPL1 is not avaliable on ENCORE database.

25 proteins are bound to TBPL1 RNA:

eCLIP assay for TBPL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBPL1 is not available on ENCORE database.

53 RBPs can affect the gene expression of TBPL1 :

The Knockdown/knockout RNA-Seq assay for TBPL1 is not available on ENCORE database.

3 RBPs can affect the splicing of TBPL1 :

The Knockdown/knockout RNA-Seq assay for TBPL1 is not avaliable on ENCORE database.