SHF

General Information

Gene Name : SHF
Gene ID : ENSG00000138606.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SHF)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SHF	ENSG00000138606.19	0.11	0.70	0.40	ENCSR000AEF
HepG2	SHF	ENSG00000138606.19	20.95	15.54	18.24	ENCSR985KAT
K562	SHF	ENSG00000138606.19	0.90	0.64	0.77	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SHF is not avaliable on ENCORE database.

Proteins bound to RNA

SHF RNA is bound by 17 proteins.

CanvasJS.com

eCLIP assay for SHF is not avaliable on ENCORE database.

17 proteins are bound to SHF RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	45490774	45490791	-	intron-Distal	4.43719	80.59149	K562	ZRANB2
chr15	45490791	45490822	-	intron-Distal	3.88228	73.77263	K562	ZRANB2
chr15	45490764	45490774	-	intron-Distal	7.00793	68.48211	K562	ZRANB2
chr15	45492629	45492641	-	intron-Distal	4.61315	28.58281	HepG2	SND1
chr15	45492641	45492646	-	intron-Distal	4.58412	27.78835	HepG2	SND1
chr15	45492608	45492616	-	intron-Distal	4.36242	27.44475	HepG2	SND1
chr15	45492616	45492642	-	intron-Distal	3.64237	26.19065	K562	DGCR8
chr15	45492642	45492646	-	intron-Distal	3.81133	25.10949	K562	DGCR8
chr15	45492605	45492616	-	intron-Distal	3.41952	24.02293	K562	DGCR8
chr15	45459545	45459675	-	3'-UTR,intron-Distal	6.07218	16.32102	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for SHF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SHF is not available on ENCORE database.
83 RBPs can affect the levels of SHF.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SHF is not available on ENCORE database.

83 RBPs can affect the gene expression of SHF :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SHF	ENSG00000138606.15	263.25370	755.07800	-1.52020	34.05540	32.57040	HepG2	PTBP1
SHF	ENSG00000138606.15	169.47160	887.15220	-2.38810	32.30760	30.74660	HepG2	AKAP1
SHF	ENSG00000138606.15	315.53310	786.19010	-1.31710	28.13950	26.59220	HepG2	SF3B4
SHF	ENSG00000138606.15	347.85980	820.58920	-1.23820	26.37030	25.23540	HepG2	SRSF1
SHF	ENSG00000138606.15	293.55170	737.51360	-1.32910	26.05250	24.56480	HepG2	TAF15
SHF	ENSG00000138606.15	350.78160	817.83520	-1.22120	22.79650	21.25610	HepG2	QKI
SHF	ENSG00000138606.15	269.35040	805.72980	-1.58080	19.45900	17.87840	HepG2	NCBP2
SHF	ENSG00000138606.15	258.20300	730.17850	-1.49970	17.50990	16.13460	HepG2	DDX6
SHF	ENSG00000138606.15	349.07900	742.21270	-1.08830	16.27380	14.71750	HepG2	RBM25
SHF	ENSG00000138606.15	570.27190	232.50990	1.29430	15.93560	14.35440	HepG2	IGF2BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 84 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SHF is not available on ENCORE database.

8 RBPs can affect the splicing of SHF :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SHF	ENSG00000138606.15	chr15	-	45465773	45465914	45464344	45464516	45467416	45467623	0.16200	0.00000	0.00024	included	HepG2	PTBP1
SE	SHF	ENSG00000138606.15	chr15	-	45464344	45464516	45464080	45464200	45467416	45467623	-0.44000	0.00000	0.00000	excluded	HepG2	SRSF1
SE	SHF	ENSG00000138606.15	chr15	-	45464080	45464200	45459910	45460331	45467416	45467623	-0.32100	0.00001	0.00095	excluded	HepG2	RBM22
A3SS	SHF	ENSG00000138606.15	chr15	-	45464080	45464246	45464080	45464200	45464344	45464516	0.31400	0.00012	0.01495	longer	HepG2	RBM22
SE	SHF	ENSG00000138606.15	chr15	-	45464080	45464200	45459411	45460331	45467416	45467623	-0.27400	0.00015	0.02462	excluded	HepG2	SSB
SE	SHF	ENSG00000138606.15	chr15	-	45464344	45464516	45464080	45464200	45467416	45467623	-0.30600	0.00040	0.01892	excluded	HepG2	HNRNPC
A5SS	SHF	ENSG00000138606.15	chr15	-	45464344	45464516	45464346	45464516	45464080	45464200	0.34100	0.00044	0.07915	longer	HepG2	PTBP1
SE	SHF	ENSG00000138606.15	chr15	-	45464344	45464516	45464080	45464200	45467416	45467623	-0.21500	0.00182	0.06534	excluded	HepG2	MATR3
SE	SHF	ENSG00000138606.15	chr15	-	45464080	45464200	45459910	45460331	45467416	45467623	0.26000	0.00482	0.09314	included	HepG2	HNRNPK
SE	SHF	ENSG00000138606.15	chr15	-	45465773	45465914	45464344	45464516	45467416	45467623	0.14900	0.00736	0.07179	included	HepG2	U2AF2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SHF

General Information

Functions

Localization

Domains (AlphaFold: SHF)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SHF is not avaliable on ENCORE database.

17 proteins are bound to SHF RNA:

eCLIP assay for SHF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SHF is not available on ENCORE database.

83 RBPs can affect the gene expression of SHF :

The Knockdown/knockout RNA-Seq assay for SHF is not available on ENCORE database.

8 RBPs can affect the splicing of SHF :

The Knockdown/knockout RNA-Seq assay for SHF is not avaliable on ENCORE database.