SEC22B

General Information

Gene Name : SEC22B
Gene ID : ENSG00000265808.3
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEC22B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEC22B	ENSG00000265808.3	21.45	20.43	20.94	ENCSR000AEF
HepG2	SEC22B	ENSG00000265808.3	11.69	19.95	15.82	ENCSR985KAT
K562	SEC22B	ENSG00000265808.3	15.13	15.33	15.23	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEC22B is not avaliable on ENCORE database.

Proteins bound to RNA

SEC22B RNA is bound by 15 proteins.

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eCLIP assay for SEC22B is not avaliable on ENCORE database.

15 proteins are bound to SEC22B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	145115707	145115760	+	intron-Proximal	4.91417	32.68152	K562	GPKOW
chr1	145103980	145104041	+	intron-Proximal	4.67458	19.60859	HepG2	PRPF8
chr1	145115709	145115762	+	intron-Proximal	5.18039	18.60679	K562	SF3B4
chr1	145096524	145096624	+	intron-Proximal	3.27103	14.24707	HepG2	GRWD1
chr1	145101423	145101505	+	intron-Distal	3.90182	14.05428	K562	RBFOX2
chr1	145115716	145115754	+	intron-Proximal	3.81488	13.49949	K562	BUD13
chr1	145112544	145112569	+	intron-Proximal	3.44662	10.21503	K562	AQR
chr1	145096909	145096996	+	intron-Distal	3.63066	10.10979	HepG2	U2AF2
chr1	145104116	145104277	+	intron-Distal,intron-Proximal	3.77113	9.89511	K562	KHSRP
chr1	145096558	145096624	+	intron-Proximal	3.62426	9.72918	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 31 entries

eCLIP assay for SEC22B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEC22B is not available on ENCORE database.
86 RBPs can affect the levels of SEC22B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEC22B is not available on ENCORE database.

86 RBPs can affect the gene expression of SEC22B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEC22B	ENSG00000223380.3	654.94520	1398.26190	-1.09420	31.74170	29.58000	HepG2	EIF4G1
SEC22B	ENSG00000223380.3	392.95070	1411.23560	-1.84450	29.35770	27.31220	HepG2	EIF4B
SEC22B	ENSG00000223380.3	664.38510	1300.86090	-0.96940	21.73550	20.37320	HepG2	TAF15
SEC22B	ENSG00000223380.3	507.63220	944.96510	-0.89650	21.01280	19.22870	HepG2	DDX19B
SEC22B	ENSG00000223380.3	914.83640	1561.69170	-0.77150	18.12330	16.65350	HepG2	AUH
SEC22B	ENSG00000223380.3	2452.42480	1336.49300	0.87570	16.83640	14.81310	K562	GPKOW
SEC22B	ENSG00000223380.3	2222.37800	1447.27480	0.61870	15.27150	14.35200	HepG2	SRSF1
SEC22B	ENSG00000223380.3	803.56900	1405.52790	-0.80660	15.99180	14.24230	HepG2	NOL12
SEC22B	ENSG00000223380.3	1827.67390	1238.98930	0.56070	14.58190	13.57060	HepG2	ZNF622
SEC22B	ENSG00000223380.3	1105.45740	1692.68400	-0.61470	14.01690	13.12090	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEC22B is not available on ENCORE database.

9 RBPs can affect the splicing of SEC22B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017			145096219	145096621	145109523	145109684	-0.13300	0.00000	0.00000	excluded	K562	SRSF1
SE	SEC22B	ENSG00000223380.3	chr1	+	145103934	145104017			145096530	145096621	145109523	145109684	0.08000	0.00002	0.00451	included	HepG2	DDX59
SE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017			145096219	145096621	145109523	145109684	-0.09300	0.00010	0.02174	excluded	K562	HNRNPM
SE	SEC22B	ENSG00000223380.3	chr1	+	145103893	145104017			145096530	145096621	145109523	145109684	0.05200	0.00031	0.07869	included	HepG2	DROSHA
MXE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017	145109523	145109684	145096219	145096621	145112372	145112519	0.15300	0.00091	0.02988	1included	HepG2	TIAL1
SE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017			145096219	145096621	145109523	145109684	-0.06500	0.00092	0.03683	excluded	K562	FXR1
SE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017			145096219	145096621	145109523	145109684	-0.06300	0.00097	0.04389	excluded	K562	HNRNPK
SE	SEC22B	ENSG00000223380.3	chr1	+	145103866	145104017			145096530	145096621	145109523	145109684	0.05500	0.00136	0.03532	included	K562	AGGF1
SE	SEC22B	ENSG00000223380.3	chr1	+	145103907	145104017			145096219	145096621	145109523	145109684	-0.05600	0.00426	0.04078	excluded	K562	AQR

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEC22B

General Information

Functions

Localization

Domains (AlphaFold: SEC22B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEC22B is not avaliable on ENCORE database.

15 proteins are bound to SEC22B RNA:

eCLIP assay for SEC22B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEC22B is not available on ENCORE database.

86 RBPs can affect the gene expression of SEC22B :

The Knockdown/knockout RNA-Seq assay for SEC22B is not available on ENCORE database.

9 RBPs can affect the splicing of SEC22B :

The Knockdown/knockout RNA-Seq assay for SEC22B is not avaliable on ENCORE database.