RP11-169F17.1

General Information

Gene Name : RP11-169F17.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-169F17.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-169F17.1 RNA is bound by 22 proteins.

CanvasJS.com

eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.

22 proteins are bound to RP11-169F17.1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	70916688	70916759	-	intron-Distal	7.74222	60.53307	K562	RBM15
chr18	70916442	70916543	-	intron-Distal	6.31195	39.83372	K562	RBM15
chr18	70919168	70919247	-	intron-Distal	5.25309	29.37048	K562	KHSRP
chr18	70914822	70914957	-	intron-Distal	4.38805	26.73177	K562	QKI
chr18	70919458	70919534	-	intron-Distal	4.90640	23.80502	K562	TARDBP
chr18	70917651	70917721	-	intron-Distal	4.62708	22.97322	K562	RBM15
chr18	70919091	70919168	-	intron-Distal	4.75254	20.11051	K562	KHSRP
chr18	70917574	70917651	-	intron-Distal	5.23344	19.39226	K562	RBM15
chr18	70914763	70914844	-	intron-Distal	6.06496	18.88769	K562	HNRNPL
chr18	70916390	70916598	-	intron-Distal	3.19086	18.04535	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 104 entries

eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-169F17.1 is not available on ENCORE database.
56 RBPs can affect the levels of RP11-169F17.1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.

56 RBPs can affect the gene expression of RP11-169F17.1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-169F17.1	ENSG00000263711.1	396.96500	1248.37520	-1.65300	46.80550	44.24430	K562	PTBP1
RP11-169F17.1	ENSG00000263711.1	423.91310	1282.34800	-1.59690	43.38630	40.08710	K562	MATR3
RP11-169F17.1	ENSG00000263711.1	1320.53420	2223.55400	-0.75170	21.37510	19.91110	K562	AGGF1
RP11-169F17.1	ENSG00000263711.1	478.55050	946.70840	-0.98420	19.41860	17.93060	K562	FXR1
RP11-169F17.1	ENSG00000263711.1	558.36850	1034.71820	-0.88990	16.56690	14.49840	K562	HNRNPU
RP11-169F17.1	ENSG00000263711.1	426.76620	904.14930	-1.08310	16.16270	13.93530	K562	FIP1L1
RP11-169F17.1	ENSG00000263711.1	309.48340	697.29940	-1.17190	14.38200	12.65990	K562	PRPF8
RP11-169F17.1	ENSG00000263711.1	1597.13440	2489.94480	-0.64060	14.93540	12.56720	K562	DKC1
RP11-169F17.1	ENSG00000263711.1	779.62450	1482.65070	-0.92730	11.91500	10.66620	K562	DDX47
RP11-169F17.1	ENSG00000263711.1	1179.83230	2039.95100	-0.79000	12.31490	10.58390	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 56 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.

11 RBPs can affect the splicing of RP11-169F17.1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.63300	0.00000	0.00000	included	K562	MATR3
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.25000	0.00000	0.00011	included	K562	PTBP1
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.05800	0.00001	0.00791	included	K562	PPIL4
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.09300	0.00008	0.04862	included	K562	TIA1
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70917527	70917930	70923047	70923153	0.28000	0.00018	0.04163	included	K562	MTPAP
MXE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70867887	70868024	70919760	70919842	70840072	70840197	70923047	70923153	0.08600	0.00033	0.01425	1included	K562	PPIL4
MXE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70917851	70917930	70919765	70919842	70917527	70917567	70923047	70923153	0.40700	0.00034	0.03483	1included	K562	HNRNPL
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.05400	0.00041	0.08558	included	K562	WDR43
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70867887	70868024	70923047	70923153	0.07700	0.00071	0.01583	included	K562	SF3B4
SE	RP11-169F17.1	ENSG00000263711.1	chr18	-	70919760	70919842			70917527	70917930	70923047	70923153	0.25700	0.00072	0.05018	included	K562	HNRNPL

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-169F17.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-169F17.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.

22 proteins are bound to RP11-169F17.1 RNA:

eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.

56 RBPs can affect the gene expression of RP11-169F17.1 :

The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.

11 RBPs can affect the splicing of RP11-169F17.1 :

The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not avaliable on ENCORE database.