PTAR1

General Information

Gene Name : PTAR1
Gene ID : ENSG00000188647.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTAR1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTAR1	ENSG00000188647.12	11.07	11.53	11.30	ENCSR000AEF
HepG2	PTAR1	ENSG00000188647.12	11.65	18.00	14.82	ENCSR985KAT
K562	PTAR1	ENSG00000188647.12	18.92	16.64	17.78	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTAR1 is not avaliable on ENCORE database.

Proteins bound to RNA

PTAR1 RNA is bound by 20 proteins.

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eCLIP assay for PTAR1 is not avaliable on ENCORE database.

20 proteins are bound to PTAR1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	72365418	72365425	-	intron-Distal	8.29593	110.19189	K562	FASTKD2
chr9	72365425	72365436	-	intron-Distal	8.29593	110.19189	K562	FASTKD2
chr9	72365407	72365418	-	intron-Distal	7.88089	108.64709	K562	FASTKD2
chr9	72330146	72330211	-	3'-UTR,intron-Distal	4.67519	20.17197	K562	TARDBP
chr9	72374638	72374744	-	intron-Distal	5.59622	19.88158	HepG2	EFTUD2
chr9	72330211	72330270	-	3'-UTR,intron-Distal	5.18815	19.26576	K562	TARDBP
chr9	72333410	72333487	-	CDS,intron-Distal,intron-Proximal	3.65314	13.64083	K562	ZNF622
chr9	72346996	72347089	-	CDS,intron-Distal,intron-Proximal	6.13025	12.49766	HepG2	PRPF8
chr9	72338238	72338304	-	CDS,intron-Distal,intron-Proximal	3.77205	12.48200	K562	ZNF622
chr9	72324521	72324581	-	3'-UTR,intron-Distal	4.30101	11.86374	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 58 entries

eCLIP assay for PTAR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTAR1 is not available on ENCORE database.
109 RBPs can affect the levels of PTAR1.

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The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.

109 RBPs can affect the gene expression of PTAR1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTAR1	ENSG00000188647.8	4277.64920	1698.82850	1.33220	63.83810	61.58560	HepG2	TAF15
PTAR1	ENSG00000188647.8	787.38510	1661.61290	-1.07740	36.69840	34.71830	HepG2	HNRNPU
PTAR1	ENSG00000188647.8	1393.30520	2525.83690	-0.85830	25.48570	23.76240	K562	FXR1
PTAR1	ENSG00000188647.8	813.81950	1614.53290	-0.98830	23.05790	21.87710	HepG2	TIAL1
PTAR1	ENSG00000188647.8	1229.69550	2250.77640	-0.87210	22.29490	19.90870	K562	HNRNPU
PTAR1	ENSG00000188647.8	1237.26740	1906.50620	-0.62380	18.19970	17.10160	HepG2	ZNF622
PTAR1	ENSG00000188647.8	902.75530	1931.88250	-1.09760	18.52430	16.71160	HepG2	ASCC1
PTAR1	ENSG00000188647.8	2006.15270	3065.53010	-0.61170	15.71540	14.47460	HepG2	ETF1
PTAR1	ENSG00000188647.8	1161.93120	1725.61110	-0.57060	14.76130	13.46080	HepG2	SMN1
PTAR1	ENSG00000188647.8	2232.27890	1537.57730	0.53780	13.00400	11.96450	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.

10 RBPs can affect the splicing of PTAR1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTAR1	ENSG00000188647.8	chr9	-	72365696	72365866			72349065	72349170	72374768	72374858	-0.22400	0.00001	0.00089	excluded	K562	AGGF1
SE	PTAR1	ENSG00000188647.8	chr9	-	72355636	72355692			72349065	72349170	72356707	72356774	0.23200	0.00007	0.05777	included	K562	SSB
SE	PTAR1	ENSG00000188647.8	chr9	-	72365696	72365866			72356707	72356774	72374768	72374858	-0.34300	0.00007	0.00464	excluded	K562	HNRNPU
SE	PTAR1	ENSG00000188647.8	chr9	-	72338241	72338546			72324437	72333600	72347054	72347268	-0.21000	0.00023	0.00398	excluded	HepG2	U2AF2
MXE	PTAR1	ENSG00000188647.8	chr9	-	72333565	72333600	72338241	72338546	72333053	72333484	72347054	72347268	-0.32000	0.00023	0.00242	2included	HepG2	U2AF2
SE	PTAR1	ENSG00000188647.8	chr9	-	72338241	72338546			72324437	72333600	72347054	72347268	-0.29000	0.00087	0.09775	excluded	HepG2	HNRNPM
MXE	PTAR1	ENSG00000188647.8	chr9	-	72338241	72338546	72347054	72347268	72324437	72333600	72349065	72349170	0.17100	0.00119	0.04657	1included	K562	AKAP8L
SE	PTAR1	ENSG00000188647.8	chr9	-	72338241	72338546			72324437	72333600	72347054	72347268	-0.15100	0.00148	0.03083	excluded	K562	U2AF1
SE	PTAR1	ENSG00000188647.8	chr9	-	72356707	72356774			72349065	72349170	72365696	72365866	-0.12700	0.00150	0.02925	excluded	K562	SF3B4
MXE	PTAR1	ENSG00000188647.8	chr9	-	72338241	72338546	72347054	72347268	72324437	72333600	72349065	72349170	0.16000	0.00154	0.02823	1included	K562	PUS1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTAR1

General Information

Functions

Localization

Domains (AlphaFold: PTAR1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTAR1 is not avaliable on ENCORE database.

20 proteins are bound to PTAR1 RNA:

eCLIP assay for PTAR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.

109 RBPs can affect the gene expression of PTAR1 :

The Knockdown/knockout RNA-Seq assay for PTAR1 is not available on ENCORE database.

10 RBPs can affect the splicing of PTAR1 :

The Knockdown/knockout RNA-Seq assay for PTAR1 is not avaliable on ENCORE database.