PRPF38B

General Information

Gene Name : PRPF38B
Gene ID : ENSG00000134186.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRPF38B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRPF38B	ENSG00000134186.11	67.37	53.92	60.65	ENCSR000AEF
HepG2	PRPF38B	ENSG00000134186.11	26.33	35.88	31.11	ENCSR985KAT
K562	PRPF38B	ENSG00000134186.11	52.22	57.50	54.86	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRPF38B is not avaliable on ENCORE database.

Proteins bound to RNA

PRPF38B RNA is bound by 34 proteins.

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eCLIP assay for PRPF38B is not avaliable on ENCORE database.

34 proteins are bound to PRPF38B RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	109235497	109235529	+	intron-Proximal	5.88773	32.73477	K562	AQR
chr1	109238291	109238380	+	5'-UTR,CDS,intron-Proximal	4.77719	29.69248	K562	AQR
chr1	109239213	109239302	+	intron-Distal,intron-Proximal	3.55516	29.16171	K562	KHSRP
chr1	109240513	109240592	+	intron-Distal	4.97072	21.65941	K562	SF3B4
chr1	109239122	109239173	+	intron-Distal	4.69850	21.65459	K562	KHSRP
chr1	109239023	109239098	+	intron-Distal,intron-Proximal	4.64930	20.16763	K562	PRPF8
chr1	109239090	109239122	+	intron-Distal	5.06787	19.94713	K562	KHSRP
chr1	109235465	109235531	+	5'-UTR,CDS,intron-Proximal	4.49960	18.94746	HepG2	PRPF8
chr1	109241181	109241266	+	CDS,intron-Proximal	6.41664	18.22745	K562	SF3B4
chr1	109235529	109235583	+	intron-Proximal	6.49884	17.53326	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 111 entries

eCLIP assay for PRPF38B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRPF38B is not available on ENCORE database.
91 RBPs can affect the levels of PRPF38B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRPF38B is not available on ENCORE database.

91 RBPs can affect the gene expression of PRPF38B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRPF38B	ENSG00000134186.7	7692.16580	4014.52560	0.93810	22.43250	20.94300	K562	AQR
PRPF38B	ENSG00000134186.7	3343.74540	5249.16650	-0.65060	13.84510	12.06810	K562	CPSF6
PRPF38B	ENSG00000134186.7	3072.96150	5011.64440	-0.70570	13.44200	11.67680	K562	GPKOW
PRPF38B	ENSG00000134186.7	3073.42540	4891.93170	-0.67060	12.62490	10.68360	K562	METAP2
PRPF38B	ENSG00000134186.7	1730.02650	1176.59800	0.55610	11.20870	10.39510	HepG2	SRSF1
PRPF38B	ENSG00000134186.7	2679.25390	2041.09460	0.39240	7.73510	7.01370	HepG2	SRFBP1
PRPF38B	ENSG00000134186.7	1491.25460	2307.65370	-0.62990	7.91160	6.79920	HepG2	CPSF6
PRPF38B	ENSG00000134186.7	3077.52710	3790.22880	-0.30050	7.91450	6.74200	K562	NSUN2
PRPF38B	ENSG00000134186.7	1002.26590	1366.70470	-0.44740	7.34860	6.42450	HepG2	PUS1
PRPF38B	ENSG00000134186.7	3622.34650	5340.94550	-0.56020	7.90340	6.41210	K562	FMR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRPF38B is not available on ENCORE database.

35 RBPs can affect the splicing of PRPF38B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PRPF38B	ENSG00000134186.7	chr1	+	109240431	109240639			109238898	109238959	109241225	109241449	0.41800	0.00000	included	HepG2	G3BP1
SE	PRPF38B	ENSG00000134186.7	chr1	+	109240568	109240639			109238918	109238959	109241225	109241449	0.23700	0.00000	included	K562	AQR
SE	PRPF38B	ENSG00000134186.7	chr1	+	109236211	109236264			109234948	109235489	109238323	109238392	-0.09200	0.00001	excluded	K562	PUS1
SE	PRPF38B	ENSG00000134186.7	chr1	+	109236211	109236264			109234948	109235489	109238323	109238392	-0.09700	0.00315	excluded	K562	SBDS
SE	PRPF38B	ENSG00000134186.7	chr1	+	109240431	109240639			109238898	109238959	109241225	109241449	0.36700	0.00015	included	HepG2	IGF2BP3
SE	PRPF38B	ENSG00000134186.7	chr1	+	109236211	109236264			109234948	109235489	109238323	109238402	-0.09300	0.00031	excluded	K562	AGGF1
SE	PRPF38B	ENSG00000134186.7	chr1	+	109240431	109240639			109238918	109238959	109241225	109241449	0.48900	0.00000	included	HepG2	KHSRP
A3SS	PRPF38B	ENSG00000134186.7	chr1	+	109241203	109241449			109241225	109241449	109238882	109238959	0.09000	0.00001	longer	K562	AQR
A5SS	PRPF38B	ENSG00000134186.7	chr1	+	109238323	109238402			109238323	109238392	109238664	109238816	0.22900	0.00002	longer	K562	AQR
MXE	PRPF38B	ENSG00000134186.7	chr1	+	109238595	109238816	109238898	109238959	109238323	109238392	109241225	109241449	0.14600	0.00001	1included	K562	AQR

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRPF38B

General Information

Functions

Localization

Domains (AlphaFold: PRPF38B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRPF38B is not avaliable on ENCORE database.

34 proteins are bound to PRPF38B RNA:

eCLIP assay for PRPF38B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRPF38B is not available on ENCORE database.

91 RBPs can affect the gene expression of PRPF38B :

The Knockdown/knockout RNA-Seq assay for PRPF38B is not available on ENCORE database.

35 RBPs can affect the splicing of PRPF38B :

The Knockdown/knockout RNA-Seq assay for PRPF38B is not avaliable on ENCORE database.