OGFOD2

General Information

Gene Name : OGFOD2
Gene ID : ENSG00000111325.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: OGFOD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	OGFOD2	ENSG00000111325.16	2.08	3.06	2.57	ENCSR000AEF
HepG2	OGFOD2	ENSG00000111325.16	14.23	3.59	8.91	ENCSR985KAT
K562	OGFOD2	ENSG00000111325.16	21.39	9.09	15.24	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for OGFOD2 is not avaliable on ENCORE database.

Proteins bound to RNA

OGFOD2 RNA is bound by 17 proteins.

CanvasJS.com

eCLIP assay for OGFOD2 is not avaliable on ENCORE database.

17 proteins are bound to OGFOD2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	123463526	123463609	+	3'-UTR,CDS,intron-Proximal	5.89165	24.88330	HepG2	PRPF8
chr12	123461534	123461639	+	5'-UTR,intron-Distal,intron-Proximal	3.58569	9.11312	HepG2	EFTUD2
chr12	123461487	123461559	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.94995	8.44604	HepG2	PRPF8
chr12	123464073	123464193	+	3'-UTR	3.39058	7.65772	K562	CSTF2T
chr12	123463656	123463758	+	3'-UTR,CDS	4.72572	7.07015	K562	SRSF1
chr12	123464118	123464174	+	3'-UTR	4.07067	6.59266	K562	DROSHA
chr12	123463549	123463578	+	3'-UTR,CDS,intron-Proximal	3.35373	6.53539	K562	PRPF8
chr12	123464103	123464188	+	3'-UTR	3.97395	6.46803	K562	UCHL5
chr12	123463131	123463198	+	intron-Proximal	5.08240	6.04760	K562	AQR
chr12	123464078	123464200	+	3'-UTR	3.05673	5.99038	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for OGFOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for OGFOD2 is not available on ENCORE database.
50 RBPs can affect the levels of OGFOD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.

50 RBPs can affect the gene expression of OGFOD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
OGFOD2	ENSG00000111325.12	481.65490	186.87420	1.36580	18.43380	16.16320	K562	TIA1
OGFOD2	ENSG00000111325.12	772.79360	397.72910	0.95820	16.10820	14.58530	K562	EIF2S2
OGFOD2	ENSG00000111325.12	295.72890	747.94440	-1.33870	13.29320	12.14810	K562	PUS1
OGFOD2	ENSG00000111325.12	442.65980	193.72270	1.19210	12.74010	11.02510	K562	TARDBP
OGFOD2	ENSG00000111325.12	435.21890	180.82850	1.26700	10.04680	7.89400	K562	SRSF5
OGFOD2	ENSG00000111325.12	436.26860	214.85340	1.02180	8.53600	7.39880	HepG2	MAGOH
OGFOD2	ENSG00000111325.12	442.48270	183.43940	1.27020	9.73430	7.30550	K562	TRA2A
OGFOD2	ENSG00000111325.12	377.25640	200.97420	0.90840	8.38500	6.88430	K562	MAGOH
OGFOD2	ENSG00000111325.12	441.51200	728.62880	-0.72270	6.58480	5.69550	K562	RBM15
OGFOD2	ENSG00000111325.12	338.21820	628.38400	-0.89370	6.93570	5.30290	K562	NAA15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.

11 RBPs can affect the splicing of OGFOD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	OGFOD2	ENSG00000111325.12	chr12	+	123462906	123463116	123462988	123463116	123461417	123461517	0.43800	0.00002	0.00162	longer	HepG2	U2AF1
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.71000	0.00002	0.00038	included	HepG2	TAF15
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.34200	0.00007	0.00060	included	K562	AQR
SE	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123460414	123459798	123459930	123461200	123461314	-0.14500	0.00169	0.04153	excluded	K562	AGGF1
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.60200	0.00205	0.01648	included	HepG2	U2AF2
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.39200	0.00209	0.04610	included	HepG2	FTO
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.37300	0.00336	0.02533	included	HepG2	SF3B4
A3SS	OGFOD2	ENSG00000111325.12	chr12	+	123462961	123463116	123462988	123463116	123461417	123461517	0.07700	0.00346	0.02089	longer	K562	AQR
SE	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123460414	123459798	123459930	123461200	123461314	-0.17400	0.00422	0.09232	excluded	K562	AKAP8L
RI	OGFOD2	ENSG00000111325.12	chr12	+	123460357	123461314	123460357	123460414	123461200	123461314	0.63500	0.00484	0.06393	included	HepG2	SRSF9

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

OGFOD2

General Information

Functions

Localization

Domains (AlphaFold: OGFOD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for OGFOD2 is not avaliable on ENCORE database.

17 proteins are bound to OGFOD2 RNA:

eCLIP assay for OGFOD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.

50 RBPs can affect the gene expression of OGFOD2 :

The Knockdown/knockout RNA-Seq assay for OGFOD2 is not available on ENCORE database.

11 RBPs can affect the splicing of OGFOD2 :

The Knockdown/knockout RNA-Seq assay for OGFOD2 is not avaliable on ENCORE database.