NT5C

General Information

Gene Name : NT5C
Gene ID : ENSG00000125458.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NT5C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NT5C	ENSG00000125458.6	6.54	16.50	11.52	ENCSR000AEF
HepG2	NT5C	ENSG00000125458.6	41.84	22.56	32.20	ENCSR985KAT
K562	NT5C	ENSG00000125458.6	29.04	20.88	24.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NT5C is not avaliable on ENCORE database.

Proteins bound to RNA

NT5C RNA is bound by 18 proteins.

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eCLIP assay for NT5C is not avaliable on ENCORE database.

18 proteins are bound to NT5C RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	73127379	73127468	-	5'-UTR,intron-Distal,intron-Proximal	4.73233	34.23751	HepG2	SF3B4
chr17	73127374	73127416	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.46318	19.58297	HepG2	SF3A3
chr17	73126339	73126373	-	3'-UTR,intron-Distal,intron-Proximal	7.19005	16.57425	K562	PABPC4
chr17	73127278	73127337	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.20864	15.63780	HepG2	PPIG
chr17	73127273	73127343	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.70415	15.19414	HepG2	SRSF1
chr17	73127184	73127294	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.14423	15.01680	HepG2	PRPF8
chr17	73127201	73127253	-	intron-Distal,intron-Proximal	4.52292	10.18833	HepG2	EFTUD2
chr17	73127644	73127750	-	CDS,intron-Distal,intron-Proximal	4.44960	10.03600	HepG2	GRWD1
chr17	73126848	73126897	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.59642	9.74663	HepG2	PPIG
chr17	73127209	73127250	-	intron-Distal,intron-Proximal	3.50876	8.78215	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 27 entries

eCLIP assay for NT5C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NT5C is not available on ENCORE database.
57 RBPs can affect the levels of NT5C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NT5C is not available on ENCORE database.

57 RBPs can affect the gene expression of NT5C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NT5C	ENSG00000125458.2	23.83740	123.72480	-2.37580	12.28930	10.57900	K562	G3BP2
NT5C	ENSG00000125458.2	429.68060	199.60610	1.10600	11.04790	9.47730	K562	TARDBP
NT5C	ENSG00000125458.2	238.43540	431.14340	-0.85460	7.37830	6.44960	K562	HNRNPC
NT5C	ENSG00000125458.2	361.91560	201.21060	0.84680	7.45450	6.40130	K562	PTBP1
NT5C	ENSG00000125458.2	369.12670	655.71800	-0.82900	7.22830	6.35160	K562	AQR
NT5C	ENSG00000125458.2	319.96500	188.16490	0.76580	6.49980	5.57990	HepG2	SMN1
NT5C	ENSG00000125458.2	366.49000	206.63130	0.82660	7.03140	5.46920	K562	MATR3
NT5C	ENSG00000125458.2	550.50000	327.35120	0.74980	6.81870	5.43040	K562	PPIG
NT5C	ENSG00000125458.2	282.69400	161.35140	0.80890	6.33210	5.41720	HepG2	SAFB2
NT5C	ENSG00000125458.2	397.50060	222.20950	0.83890	5.78720	4.85020	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 63 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NT5C is not available on ENCORE database.

10 RBPs can affect the splicing of NT5C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.18900	0.00001	0.00163	longer	K562	HNRNPC
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127139	73127376	73127275	73127376	73126847	73126962	-0.23900	0.00003	0.00403	shorter	K562	HNRNPC
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.11900	0.00008	0.00473	longer	K562	PUS1
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.25600	0.00014	0.01693	longer	HepG2	SF3B4
SE	NT5C	ENSG00000125458.2	chr17	-	73127139	73127200	73126847	73126962	73127275	73127376	-0.11300	0.00016	0.00409	excluded	K562	HNRNPC
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.11700	0.00020	0.02280	longer	K562	RBM15
RI	NT5C	ENSG00000125458.2	chr17	-	73127147	73127353	73127147	73127200	73127275	73127353	0.16800	0.00054	0.00386	included	K562	AQR
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.10300	0.00058	0.05287	longer	K562	UTP18
A5SS	NT5C	ENSG00000125458.2	chr17	-	73127059	73127376	73127139	73127376	73126847	73126962	0.32300	0.00081	0.04691	longer	K562	U2AF2
RI	NT5C	ENSG00000125458.2	chr17	-	73127147	73127353	73127147	73127200	73127275	73127353	0.19100	0.00098	0.01218	included	K562	EFTUD2

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NT5C

General Information

Functions

Localization

Domains (AlphaFold: NT5C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NT5C is not avaliable on ENCORE database.

18 proteins are bound to NT5C RNA:

eCLIP assay for NT5C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NT5C is not available on ENCORE database.

57 RBPs can affect the gene expression of NT5C :

The Knockdown/knockout RNA-Seq assay for NT5C is not available on ENCORE database.

10 RBPs can affect the splicing of NT5C :

The Knockdown/knockout RNA-Seq assay for NT5C is not avaliable on ENCORE database.