LMF2

General Information

Gene Name : LMF2
Gene ID : ENSG00000100258.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LMF2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LMF2	ENSG00000100258.17	0.28	2.28	1.28	ENCSR000AEF
HepG2	LMF2	ENSG00000100258.17	30.35	3.45	16.90	ENCSR985KAT
K562	LMF2	ENSG00000100258.17	9.82	2.15	5.99	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LMF2 is not avaliable on ENCORE database.

Proteins bound to RNA

LMF2 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for LMF2 is not avaliable on ENCORE database.

19 proteins are bound to LMF2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	50942864	50942935	-	CDS,intron-Distal,intron-Proximal	3.30001	28.84555	HepG2	PRPF8
chr22	50942814	50942928	-	CDS,intron-Distal,intron-Proximal	6.16074	23.03441	K562	DDX24
chr22	50942832	50942919	-	CDS,intron-Distal,intron-Proximal	4.73850	22.51249	HepG2	BUD13
chr22	50945505	50945565	-	5'-UTR,intron-Distal,intron-Proximal	5.30204	20.79930	HepG2	RBFOX2
chr22	50942840	50942927	-	CDS,intron-Distal,intron-Proximal	4.23092	17.51242	K562	BUD13
chr22	50941617	50941740	-	3'-UTR,intron-Distal,intron-Proximal	4.53969	16.38595	HepG2	UPF1
chr22	50942841	50942930	-	CDS,intron-Distal,intron-Proximal	3.82688	15.54713	HepG2	EFTUD2
chr22	50944931	50945029	-	intron-Distal,intron-Proximal	6.38081	14.81270	HepG2	EFTUD2
chr22	50945968	50946014	-	5'-UTR,CDS,intron-Distal	5.36499	13.44390	HepG2	PRPF8
chr22	50942252	50942309	-	CDS,intron-Distal	4.59177	12.82650	HepG2	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for LMF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LMF2 is not available on ENCORE database.
113 RBPs can affect the levels of LMF2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.

113 RBPs can affect the gene expression of LMF2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LMF2	ENSG00000100258.13	1330.43210	487.65290	1.44790	50.70520	48.50420	HepG2	SRSF5
LMF2	ENSG00000100258.13	1196.97700	554.59040	1.10980	33.06820	31.33140	HepG2	SUCLG1
LMF2	ENSG00000100258.13	597.00330	218.41000	1.45060	32.62230	30.62430	HepG2	DNAJC2
LMF2	ENSG00000100258.13	1005.53670	475.28460	1.08100	29.31810	27.40640	HepG2	HNRNPL
LMF2	ENSG00000100258.13	1098.64970	473.57640	1.21400	27.38980	25.63080	HepG2	SLBP
LMF2	ENSG00000100258.13	1204.13360	493.89230	1.28560	26.93720	25.33760	HepG2	PUF60
LMF2	ENSG00000100258.13	2033.29770	1252.55200	0.69890	23.11070	21.91300	HepG2	ZNF622
LMF2	ENSG00000100258.13	997.46730	524.29370	0.92780	23.20050	21.82490	HepG2	PUM1
LMF2	ENSG00000100258.13	404.89280	118.90910	1.76760	24.36030	21.76020	K562	TIA1
LMF2	ENSG00000100258.13	315.71890	865.10330	-1.45420	19.19420	17.90770	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.

10 RBPs can affect the splicing of LMF2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	0.11900	0.00000	0.00003	included	HepG2	G3BP1
RI	LMF2	ENSG00000100258.13	chr22	-	50943566	50943746			50943566	50943582	50943657	50943746	0.18800	0.00000	0.00004	included	K562	AQR
A3SS	LMF2	ENSG00000100258.13	chr22	-	50944102	50944331			50944102	50944244	50944463	50944649	0.09300	0.00003	0.00024	longer	K562	AQR
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	-0.11200	0.00003	0.00807	excluded	HepG2	DDX55
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	0.07400	0.00034	0.00663	included	HepG2	PCBP1
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	-0.12000	0.00041	0.07405	excluded	K562	DHX30
MXE	LMF2	ENSG00000100258.13	chr22	-	50943485	50943582	50943657	50943763	50943230	50943413	50943831	50943966	-0.16800	0.00129	0.07190	2included	HepG2	NOL12
A3SS	LMF2	ENSG00000100258.13	chr22	-	50942236	50942359			50942236	50942333	50942768	50942880	0.10700	0.00198	0.01277	longer	K562	AQR
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	-0.06500	0.00201	0.08912	excluded	K562	PPIL4
RI	LMF2	ENSG00000100258.13	chr22	-	50942768	50943156			50942768	50942880	50942987	50943156	0.05100	0.00297	0.05387	included	HepG2	KHSRP

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LMF2

General Information

Functions

Localization

Domains (AlphaFold: LMF2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LMF2 is not avaliable on ENCORE database.

19 proteins are bound to LMF2 RNA:

eCLIP assay for LMF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.

113 RBPs can affect the gene expression of LMF2 :

The Knockdown/knockout RNA-Seq assay for LMF2 is not available on ENCORE database.

10 RBPs can affect the splicing of LMF2 :

The Knockdown/knockout RNA-Seq assay for LMF2 is not avaliable on ENCORE database.