LMBR1L

General Information

Gene Name : LMBR1L
Gene ID : ENSG00000139636.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LMBR1L)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LMBR1L	ENSG00000139636.15	14.64	17.63	16.13	ENCSR000AEF
HepG2	LMBR1L	ENSG00000139636.15	19.28	13.19	16.23	ENCSR985KAT
K562	LMBR1L	ENSG00000139636.15	32.78	36.53	34.66	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LMBR1L is not avaliable on ENCORE database.

Proteins bound to RNA

LMBR1L RNA is bound by 16 proteins.

CanvasJS.com

eCLIP assay for LMBR1L is not avaliable on ENCORE database.

16 proteins are bound to LMBR1L RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	49496699	49496874	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.52680	37.03848	K562	EFTUD2
chr12	49499579	49499689	-	intron-Distal,intron-Proximal	4.12681	14.91193	K562	EFTUD2
chr12	49496688	49496807	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.73549	12.63950	K562	SF3B4
chr12	49496254	49496326	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.72304	11.63887	K562	DDX24
chr12	49499277	49499360	-	intron-Distal	3.95035	10.83327	K562	EFTUD2
chr12	49496727	49496788	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.15734	9.90495	HepG2	EFTUD2
chr12	49496669	49496728	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.60773	9.20049	K562	DDX24
chr12	49495287	49495333	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.82953	8.66757	K562	DDX24
chr12	49499689	49499752	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.30206	8.09130	K562	EFTUD2
chr12	49498648	49498711	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.68471	7.66684	HepG2	SF3A3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 44 entries

eCLIP assay for LMBR1L is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LMBR1L is not available on ENCORE database.
96 RBPs can affect the levels of LMBR1L.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LMBR1L is not available on ENCORE database.

96 RBPs can affect the gene expression of LMBR1L :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LMBR1L	ENSG00000139636.11	1921.95510	800.13360	1.26420	53.03080	51.56060	HepG2	SRFBP1
LMBR1L	ENSG00000139636.11	356.32310	898.34210	-1.33410	32.46460	31.23610	HepG2	SRSF1
LMBR1L	ENSG00000139636.11	1469.50890	738.22820	0.99310	28.02780	26.25290	HepG2	AUH
LMBR1L	ENSG00000139636.11	1907.39250	798.54660	1.25610	20.15660	18.69490	HepG2	DDX6
LMBR1L	ENSG00000139636.11	364.43780	861.00540	-1.24030	15.21500	13.82660	HepG2	MATR3
LMBR1L	ENSG00000139636.11	1491.79680	708.41430	1.07430	14.69590	13.69320	HepG2	RBM22
LMBR1L	ENSG00000139636.11	1809.97020	929.46710	0.96140	13.85510	12.56150	HepG2	DDX3X
LMBR1L	ENSG00000139636.11	530.84900	923.37160	-0.79860	13.09300	11.87440	K562	FXR1
LMBR1L	ENSG00000139636.11	407.92360	183.42810	1.15300	10.99760	9.69520	HepG2	TARDBP
LMBR1L	ENSG00000139636.11	716.98310	452.81420	0.66290	10.15150	9.26950	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LMBR1L is not available on ENCORE database.

18 RBPs can affect the splicing of LMBR1L :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LMBR1L	ENSG00000139636.11	chr12	-	49499706	49499740			49498528	49498668	49500743	49500828	-0.22300	0.00000	0.00007	excluded	K562	AKAP8L
SE	LMBR1L	ENSG00000139636.11	chr12	-	49499706	49499740			49498528	49498668	49500743	49500828	-0.26200	0.00000	0.00000	excluded	K562	PUS1
SE	LMBR1L	ENSG00000139636.11	chr12	-	49500293	49500529			49499706	49499740	49500743	49500794	0.33900	0.00000	0.00033	included	K562	HNRNPU
MXE	LMBR1L	ENSG00000139636.11	chr12	-	49498501	49498668	49499706	49499740	49498230	49498334	49500743	49500828	-0.29500	0.00000	0.00000	2included	K562	PUS1
MXE	LMBR1L	ENSG00000139636.11	chr12	-	49498501	49498668	49499706	49499740	49498230	49498334	49500743	49500828	-0.28600	0.00000	0.00004	2included	K562	AKAP8L
SE	LMBR1L	ENSG00000139636.11	chr12	-	49498230	49498334			49497469	49497596	49498528	49498668	-0.54100	0.00001	0.00024	excluded	HepG2	U2AF1
SE	LMBR1L	ENSG00000139636.11	chr12	-	49499706	49499740			49498528	49498668	49500743	49500828	-0.17300	0.00001	0.00052	excluded	K562	RBM15
SE	LMBR1L	ENSG00000139636.11	chr12	-	49498230	49498334			49497469	49497596	49498528	49498668	-0.62300	0.00003	0.00071	excluded	HepG2	U2AF2
MXE	LMBR1L	ENSG00000139636.11	chr12	-	49498501	49498668	49499706	49499740	49498230	49498334	49500743	49500828	-0.16700	0.00003	0.00224	2included	K562	RBM15
SE	LMBR1L	ENSG00000139636.11	chr12	-	49498230	49498334			49497469	49497596	49498528	49498668	-0.26200	0.00005	0.00165	excluded	K562	U2AF2

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LMBR1L

General Information

Functions

Localization

Domains (AlphaFold: LMBR1L)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LMBR1L is not avaliable on ENCORE database.

16 proteins are bound to LMBR1L RNA:

eCLIP assay for LMBR1L is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LMBR1L is not available on ENCORE database.

96 RBPs can affect the gene expression of LMBR1L :

The Knockdown/knockout RNA-Seq assay for LMBR1L is not available on ENCORE database.

18 RBPs can affect the splicing of LMBR1L :

The Knockdown/knockout RNA-Seq assay for LMBR1L is not avaliable on ENCORE database.