LINC00958

General Information

Gene Name : LINC00958
Gene ID : ENSG00000251381.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LINC00958)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LINC00958	ENSG00000251381.7	0.00	0.15	0.07	ENCSR000AEF
HepG2	LINC00958	ENSG00000251381.7	1.80	1.84	1.82	ENCSR985KAT
K562	LINC00958	ENSG00000251381.7	73.02	74.19	73.60	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LINC00958 is not avaliable on ENCORE database.

Proteins bound to RNA

LINC00958 RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for LINC00958 is not avaliable on ENCORE database.

7 proteins are bound to LINC00958 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	13001042	13001102	-	intron-Distal,intron-Proximal,polyA_site	3.82142	13.97339	K562	PUM2
chr11	12984072	12984171	-	intron-Distal	4.30555	12.35757	K562	PUM2
chr11	13006811	13006898	-	intron-Distal	4.08413	10.99259	K562	TARDBP
chr11	13003027	13003100	-	intron-Distal	3.50072	10.86778	K562	SAFB2
chr11	13004326	13004413	-	intron-Distal	3.76160	9.68362	K562	SAFB2
chr11	13005080	13005148	-	intron-Distal	3.75217	9.47424	K562	SAFB2
chr11	13002585	13002662	-	intron-Distal	3.60242	8.55178	K562	SAFB2
chr11	12999885	12999978	-	intron-Distal	3.61298	8.16117	K562	TARDBP
chr11	13003359	13003427	-	intron-Distal	3.98635	7.64122	K562	SAFB2
chr11	13007277	13007407	-	intron-Distal	3.19622	7.24951	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for LINC00958 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LINC00958 is not available on ENCORE database.
70 RBPs can affect the levels of LINC00958.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.

70 RBPs can affect the gene expression of LINC00958 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LINC00958	ENSG00000251381.2	522.98160	1106.34050	-1.08100	25.74160	24.12360	K562	AGGF1
LINC00958	ENSG00000251381.2	1004.28210	456.06450	1.13880	25.19750	23.48870	K562	FXR1
LINC00958	ENSG00000251381.2	577.26940	1112.38840	-0.94630	18.12120	16.57270	K562	RBM15
LINC00958	ENSG00000251381.2	612.05010	1221.73990	-0.99720	17.62330	14.86740	K562	KIF1C
LINC00958	ENSG00000251381.2	578.44870	1151.18450	-0.99290	16.08340	14.27300	K562	AKAP8L
LINC00958	ENSG00000251381.2	1486.60810	811.29470	0.87360	16.37370	14.05840	K562	HNRNPA1
LINC00958	ENSG00000251381.2	128.78700	20.33990	2.66250	12.68590	11.09250	HepG2	CNOT7
LINC00958	ENSG00000251381.2	734.90060	1207.84520	-0.71680	12.40790	10.29400	K562	ATP5C1
LINC00958	ENSG00000251381.2	616.70610	1141.75200	-0.88860	11.17810	10.13680	K562	PUS1
LINC00958	ENSG00000251381.2	453.53290	959.32120	-1.08080	11.16750	8.92020	K562	NAA15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 73 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.

13 RBPs can affect the splicing of LINC00958 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	-0.46600	0.00000	0.00000	excluded	K562	SRSF1
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	0.33600	0.00000	0.00080	included	K562	WDR3
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	0.32300	0.00000	0.00009	included	K562	U2AF1
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	0.24400	0.00000	0.00049	included	K562	HNRNPU
SE	LINC00958	ENSG00000251381.2	chr11	-	12986654	12986761	12984056	12984310	13011002	13011094	-0.26800	0.00000	0.00008	excluded	K562	HNRNPU
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	-0.38800	0.00000	0.00000	excluded	K562	HNRNPC
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	-0.32100	0.00001	0.00057	excluded	K562	FXR1
SE	LINC00958	ENSG00000251381.2	chr11	-	12986654	12986761	12984056	12984310	13011002	13011094	-0.32500	0.00001	0.00128	excluded	K562	EFTUD2
SE	LINC00958	ENSG00000251381.2	chr11	-	13007586	13007691	13001584	13002456	13011002	13011086	0.28500	0.00001	0.00561	included	K562	UPF1
SE	LINC00958	ENSG00000251381.2	chr11	-	13005772	13005885	13002175	13002456	13007586	13007691	0.77900	0.00002	0.00083	included	K562	SRSF1

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LINC00958

General Information

Functions

Localization

Domains (AlphaFold: LINC00958)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LINC00958 is not avaliable on ENCORE database.

7 proteins are bound to LINC00958 RNA:

eCLIP assay for LINC00958 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.

70 RBPs can affect the gene expression of LINC00958 :

The Knockdown/knockout RNA-Seq assay for LINC00958 is not available on ENCORE database.

13 RBPs can affect the splicing of LINC00958 :

The Knockdown/knockout RNA-Seq assay for LINC00958 is not avaliable on ENCORE database.