HCCS

General Information

Gene Name : HCCS
Gene ID : ENSG00000004961.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HCCS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HCCS	ENSG00000004961.14	24.87	26.00	25.44	ENCSR000AEF
HepG2	HCCS	ENSG00000004961.14	24.25	30.18	27.21	ENCSR985KAT
K562	HCCS	ENSG00000004961.14	51.30	48.62	49.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HCCS is not avaliable on ENCORE database.

Proteins bound to RNA

HCCS RNA is bound by 3 proteins.

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eCLIP assay for HCCS is not avaliable on ENCORE database.

3 proteins are bound to HCCS RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	11129500	11129564	+	5'-UTR,intron-Proximal	4.25060	8.45138	K562	DDX3X
chrX	11135465	11135520	+	CDS	3.68566	6.00726	K562	YBX3
chrX	11140420	11140487	+	3'-UTR	4.49128	4.92383	K562	FAM120A
chrX	11135450	11135465	+	CDS	3.31295	3.90824	K562	YBX3
chrX	11129592	11129638	+	5'-UTR,intron-Proximal	4.83498	3.85934	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 5 of 5 entries

eCLIP assay for HCCS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HCCS is not available on ENCORE database.
66 RBPs can affect the levels of HCCS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HCCS is not available on ENCORE database.

66 RBPs can affect the gene expression of HCCS :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HCCS	ENSG00000004961.10	673.30850	355.97430	0.91940	13.03300	12.17080	HepG2	SRSF1
HCCS	ENSG00000004961.10	1140.76010	681.54440	0.74300	13.27330	12.04850	K562	FXR1
HCCS	ENSG00000004961.10	914.50250	577.31170	0.66350	11.12970	10.30650	HepG2	SRFBP1
HCCS	ENSG00000004961.10	791.12200	390.41850	1.01880	9.91890	8.97810	HepG2	AKAP1
HCCS	ENSG00000004961.10	816.30550	1214.57210	-0.57330	8.93530	7.75570	K562	EIF2S2
HCCS	ENSG00000004961.10	750.17090	479.73590	0.64490	8.38920	7.38500	HepG2	CELF1
HCCS	ENSG00000004961.10	664.14760	346.38800	0.93900	8.41630	7.36560	HepG2	MATR3
HCCS	ENSG00000004961.10	658.46790	374.02280	0.81590	7.17110	6.20820	HepG2	DDX3X
HCCS	ENSG00000004961.10	720.11070	1021.59360	-0.50450	7.28710	6.18690	K562	UPF1
HCCS	ENSG00000004961.10	505.27170	317.90580	0.66840	6.68460	5.82230	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 69 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HCCS is not available on ENCORE database.

6 RBPs can affect the splicing of HCCS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	HCCS	ENSG00000004961.10	chrX	+	11139026	11139113	11136620	11136740	11139731	11139999	-0.09000	0.00000	0.00000	excluded	K562	AQR
SE	HCCS	ENSG00000004961.10	chrX	+	11139026	11139113	11136620	11136740	11139731	11139999	-0.18800	0.00008	0.00511	excluded	K562	SF3B1
SE	HCCS	ENSG00000004961.10	chrX	+	11139026	11139113	11136620	11136740	11139731	11139999	-0.06500	0.00012	0.00683	excluded	K562	PRPF8
SE	HCCS	ENSG00000004961.10	chrX	+	11139026	11139113	11136620	11136740	11139731	11139999	-0.07900	0.00024	0.00652	excluded	K562	SF3B4
SE	HCCS	ENSG00000004961.10	chrX	+	11139026	11139113	11136620	11136740	11139731	11139999	-0.05100	0.00049	0.02188	excluded	K562	TARDBP
A5SS	HCCS	ENSG00000004961.10	chrX	+	11139026	11139152	11139026	11139113	11139731	11141198	0.06600	0.00059	0.05678	longer	K562	PRPF8
A5SS	HCCS	ENSG00000004961.10	chrX	+	11139026	11139152	11139026	11139113	11139731	11139999	0.08900	0.00070	0.02870	longer	K562	PUS1

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HCCS

General Information

Functions

Localization

Domains (AlphaFold: HCCS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HCCS is not avaliable on ENCORE database.

3 proteins are bound to HCCS RNA:

eCLIP assay for HCCS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HCCS is not available on ENCORE database.

66 RBPs can affect the gene expression of HCCS :

The Knockdown/knockout RNA-Seq assay for HCCS is not available on ENCORE database.

6 RBPs can affect the splicing of HCCS :

The Knockdown/knockout RNA-Seq assay for HCCS is not avaliable on ENCORE database.