ECD

General Information

Gene Name : ECD
Gene ID : ENSG00000122882.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ECD)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ECD	ENSG00000122882.10	36.51	31.20	33.85	ENCSR000AEF
HepG2	ECD	ENSG00000122882.10	14.82	26.04	20.43	ENCSR985KAT
K562	ECD	ENSG00000122882.10	36.82	39.98	38.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ECD is not avaliable on ENCORE database.

Proteins bound to RNA

ECD RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for ECD is not avaliable on ENCORE database.

10 proteins are bound to ECD RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	74923592	74923709	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.84359	8.94272	HepG2	GRWD1
chr10	74923614	74923661	-	CDS,intron-Distal	3.79220	8.40792	HepG2	PPIG
chr10	74923609	74923658	-	CDS,intron-Distal	4.02069	7.28307	HepG2	BCLAF1
chr10	74899184	74899251	-	3'-UTR,CDS,intron-Distal	3.17689	6.00907	HepG2	PPIG
chr10	74896374	74896462	-	intron-Distal,intron-Proximal	4.02731	5.63763	K562	AQR
chr10	74894369	74894436	-	3'-UTR,CDS,intron-Distal	3.12255	5.35431	HepG2	BCLAF1
chr10	74921707	74921788	-	intron-Distal	4.69409	5.04868	K562	HNRNPM
chr10	74920196	74920229	-	CDS,intron-Distal	4.51287	4.78529	HepG2	BCLAF1
chr10	74923599	74923657	-	CDS,intron-Distal	3.33103	4.63109	K562	GRWD1
chr10	74894514	74894602	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.67517	4.41130	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 16 entries

eCLIP assay for ECD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ECD is not available on ENCORE database.
70 RBPs can affect the levels of ECD.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ECD is not available on ENCORE database.

70 RBPs can affect the gene expression of ECD :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ECD	ENSG00000122882.6	566.32710	1498.79160	-1.40410	34.76860	32.73290	K562	HNRNPC
ECD	ENSG00000122882.6	1259.36090	609.10440	1.04780	23.67320	22.58640	HepG2	SRSF1
ECD	ENSG00000122882.6	279.27980	653.85610	-1.22730	16.10630	14.56610	HepG2	HNRNPC
ECD	ENSG00000122882.6	1353.45250	653.72790	1.04980	12.80470	11.74850	HepG2	AKAP1
ECD	ENSG00000122882.6	2090.62740	1092.12810	0.93670	13.35080	11.53130	K562	RPS19
ECD	ENSG00000122882.6	404.80360	694.64960	-0.77910	11.94440	10.67760	HepG2	UPF1
ECD	ENSG00000122882.6	493.30260	885.92530	-0.84470	10.82070	9.74550	HepG2	PUF60
ECD	ENSG00000122882.6	1304.26020	700.29820	0.89710	7.99170	6.92620	HepG2	U2AF1
ECD	ENSG00000122882.6	1681.98390	1166.40310	0.52800	7.44080	6.12740	K562	U2AF2
ECD	ENSG00000122882.6	3127.26620	2414.15830	0.37330	6.97240	6.00340	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ECD is not available on ENCORE database.

23 RBPs can affect the splicing of ECD :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.25200	0.00056	excluded	K562	SMNDC1
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.32400	0.00000	excluded	K562	AKAP8L
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.40700	0.00000	excluded	K562	PUS1
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.32000	0.00004	excluded	K562	U2AF1
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.24400	0.00276	excluded	K562	ZRANB2
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.27800	0.00012	excluded	K562	SRSF7
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.31100	0.00000	excluded	K562	RBM15
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927829	-0.36800	0.00000	excluded	K562	AGGF1
SE	ECD	ENSG00000122882.6	chr10	-	74923490	74923708	74920191	74920309	74927623	74927822	-0.23900	0.00943	excluded	K562	DDX3X
A3SS	ECD	ENSG00000122882.6	chr10	-	74899066	74899303	74899066	74899253	74899388	74899495	0.08800	0.00000	longer	K562	AQR

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ECD

General Information

Functions

Localization

Domains (AlphaFold: ECD)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ECD is not avaliable on ENCORE database.

10 proteins are bound to ECD RNA:

eCLIP assay for ECD is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ECD is not available on ENCORE database.

70 RBPs can affect the gene expression of ECD :

The Knockdown/knockout RNA-Seq assay for ECD is not available on ENCORE database.

23 RBPs can affect the splicing of ECD :

The Knockdown/knockout RNA-Seq assay for ECD is not avaliable on ENCORE database.