CPPED1

General Information

Gene Name : CPPED1
Gene ID : ENSG00000103381.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CPPED1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CPPED1	ENSG00000103381.11	15.64	15.92	15.78	ENCSR000AEF
HepG2	CPPED1	ENSG00000103381.11	72.85	99.99	86.42	ENCSR985KAT
K562	CPPED1	ENSG00000103381.11	13.71	15.12	14.41	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CPPED1 is not avaliable on ENCORE database.

Proteins bound to RNA

CPPED1 RNA is bound by 16 proteins.

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eCLIP assay for CPPED1 is not avaliable on ENCORE database.

16 proteins are bound to CPPED1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	12758042	12758123	-	3'-UTR,intron-Distal	3.79512	4.23488	K562	FAM120A
chr16	12757911	12758042	-	3'-UTR,intron-Distal	3.81245	4.91593	K562	FAM120A
chr16	12757940	12757986	-	3'-UTR,intron-Distal	4.17120	3.95192	HepG2	UPF1
chr16	12758785	12758948	-	3'-UTR,CDS,intron-Distal	3.11721	6.09877	HepG2	G3BP1
chr16	12757668	12757706	-	3'-UTR,intron-Distal	4.01616	3.20319	K562	UPF1
chr16	12758424	12758461	-	3'-UTR,intron-Distal	4.24857	3.56427	K562	FAM120A
chr16	12757986	12758068	-	3'-UTR,intron-Distal	4.88001	6.96152	HepG2	UPF1
chr16	12897575	12897707	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.45981	5.43397	K562	NOLC1
chr16	12897573	12897707	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.39080	4.47117	K562	DDX3X
chr16	12897600	12897696	-	5'-UTR,CDS,intron-Distal	5.32273	14.17008	HepG2	SUB1
chr16	12798772	12798842	-	CDS,intron-Distal	3.81731	5.69815	HepG2	G3BP1
chr16	12875174	12875227	-	CDS,intron-Distal	3.13462	3.69775	K562	YBX3
chr16	12875088	12875220	-	CDS,intron-Distal	3.54515	9.28648	HepG2	G3BP1
chr16	12798695	12798744	-	CDS,intron-Distal	3.58529	4.30677	K562	YBX3
chr16	12782916	12782995	-	intron-Distal	4.44393	4.68586	HepG2	HNRNPL
chr16	12844123	12844170	-	intron-Distal	3.95577	6.77804	HepG2	QKI
chr16	12803788	12803868	-	intron-Distal	3.31815	7.79779	HepG2	PTBP1
chr16	12826277	12826350	-	intron-Distal	3.26630	5.20425	HepG2	MATR3
chr16	12803806	12803864	-	intron-Distal	4.86147	6.17200	HepG2	PCBP2
chr16	12840170	12840234	-	intron-Distal	3.73239	6.18300	HepG2	HNRNPC
chr16	12782088	12782138	-	intron-Distal	3.29229	3.10946	HepG2	SFPQ
chr16	12803710	12803788	-	intron-Distal	6.14735	15.77934	HepG2	PTBP1
chr16	12810851	12810952	-	intron-Distal	3.23428	3.37567	HepG2	HNRNPK
chr16	12761594	12761661	-	intron-Distal	4.76157	4.40618	K562	PTBP1
chr16	12834623	12834645	-	intron-Distal	4.18858	3.41738	HepG2	PTBP1
chr16	12782812	12782916	-	intron-Distal	3.43657	5.82614	HepG2	HNRNPL
chr16	12803698	12803806	-	intron-Distal	5.18048	31.03284	HepG2	PCBP2
chr16	12833743	12833782	-	intron-Distal	3.21482	3.34990	HepG2	PTBP1
chr16	12840862	12840915	-	intron-Distal	4.42268	4.12150	K562	LSM11
chr16	12839021	12839100	-	intron-Distal	3.76321	5.28137	HepG2	MATR3
chr16	12864650	12864729	-	intron-Distal	5.52710	7.91717	K562	PTBP1
chr16	12765198	12765297	-	intron-Distal	3.64788	6.41195	HepG2	PTBP1
chr16	12759209	12759283	-	intron-Distal	3.29978	3.30286	HepG2	PTBP1
chr16	12874650	12874715	-	intron-Distal	3.58429	4.51074	HepG2	HNRNPL
chr16	12833837	12833919	-	intron-Distal	4.24515	7.08067	K562	PTBP1
chr16	12871041	12871139	-	intron-Distal	3.75121	6.22064	HepG2	QKI
chr16	12846540	12846603	-	intron-Distal	4.17169	4.04710	HepG2	HNRNPC
chr16	12833925	12833966	-	intron-Distal	3.50730	4.48652	HepG2	PTBP1
chr16	12823102	12823153	-	intron-Distal	4.66329	3.50357	HepG2	QKI
chr16	12833837	12833898	-	intron-Distal	5.89501	29.61853	HepG2	PTBP1
chr16	12864657	12864738	-	intron-Distal	3.83047	9.15475	HepG2	PCBP2
chr16	12833898	12833925	-	intron-Distal	6.02880	15.53570	HepG2	PTBP1
chr16	12760693	12760761	-	intron-Distal	4.64502	4.51735	HepG2	QKI
chr16	12844193	12844299	-	intron-Distal	6.22448	37.00288	HepG2	QKI
chr16	12844196	12844299	-	intron-Distal	5.09166	4.99795	K562	QKI
chr16	12761603	12761706	-	intron-Distal	4.46607	7.88692	HepG2	PTBP1
chr16	12837764	12837820	-	intron-Distal	3.09362	5.77876	HepG2	HNRNPC
chr16	12864652	12864741	-	intron-Distal	5.70814	41.92024	HepG2	PTBP1
chr16	12838795	12838846	-	intron-Distal	3.07450	5.39438	HepG2	HNRNPC
chr16	12844098	12844123	-	intron-Distal	4.50232	5.05488	HepG2	QKI
chr16	12874647	12874707	-	intron-Distal	3.13066	3.00914	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CPPED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CPPED1 is not available on ENCORE database.
95 RBPs can affect the levels of CPPED1.

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The Knockdown/knockout RNA-Seq assay for CPPED1 is not available on ENCORE database.

95 RBPs can affect the gene expression of CPPED1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CPPED1	ENSG00000103381.7	4748.02920	3592.56930	0.40220	3.72750	2.64140	HepG2	ABCF1
CPPED1	ENSG00000103381.7	3386.68450	2814.68130	0.26680	4.53610	3.79430	HepG2	ACO1
CPPED1	ENSG00000103381.7	3633.44600	4901.22010	-0.43180	3.46880	2.88190	HepG2	AKAP1
CPPED1	ENSG00000103381.7	3398.33640	2827.58260	0.26520	3.87190	2.97730	HepG2	AKAP8L
CPPED1	ENSG00000103381.7	5586.52740	3852.82590	0.53590	6.51760	5.36540	HepG2	CIRBP
CPPED1	ENSG00000103381.7	3381.32430	2813.68130	0.26500	4.39750	3.59660	HepG2	CKAP4
CPPED1	ENSG00000103381.7	1908.78370	3028.15180	-0.66580	17.50900	16.16920	HepG2	CELF1
CPPED1	ENSG00000103381.7	1845.24090	2204.33900	-0.25650	2.81950	1.64960	HepG2	DDX1
CPPED1	ENSG00000103381.7	2931.40530	2222.90600	0.39900	4.27270	3.44740	HepG2	DDX21
CPPED1	ENSG00000103381.7	3634.63150	4694.88170	-0.36930	3.05730	2.40490	HepG2	DDX3X
CPPED1	ENSG00000103381.7	1721.81000	2362.72800	-0.45650	3.79520	2.90500	HepG2	DDX55
CPPED1	ENSG00000103381.7	3731.62860	3047.61310	0.29200	2.33770	1.40880	HepG2	DDX5
CPPED1	ENSG00000103381.7	3236.62460	4033.27470	-0.31750	2.05060	1.51200	HepG2	DDX6
CPPED1	ENSG00000103381.7	3886.68110	2692.78690	0.52930	14.00710	12.72520	HepG2	DKC1
CPPED1	ENSG00000103381.7	2713.22670	2161.50860	0.32790	4.55330	3.66890	HepG2	DNAJC21
CPPED1	ENSG00000103381.7	1358.70210	2142.28630	-0.65690	20.91060	19.27340	HepG2	DNAJC2
CPPED1	ENSG00000103381.7	3413.85900	2417.42090	0.49780	5.60270	4.32800	HepG2	EEF2
CPPED1	ENSG00000103381.7	1322.40610	2047.04210	-0.63040	5.44620	3.89950	HepG2	AGO1
CPPED1	ENSG00000103381.7	2209.50370	3877.01270	-0.81120	12.20760	11.01820	HepG2	EIF2S1
CPPED1	ENSG00000103381.7	4258.01820	3212.25400	0.40650	8.69470	7.36490	HepG2	EIF4G1
CPPED1	ENSG00000103381.7	1398.36060	1753.84930	-0.32680	3.28030	1.99300	HepG2	FAM120A
CPPED1	ENSG00000103381.7	3010.45410	4323.20170	-0.52210	5.77760	4.80130	HepG2	FXR1
CPPED1	ENSG00000103381.7	2292.71830	4010.19390	-0.80660	11.16980	9.87680	HepG2	G3BP1
CPPED1	ENSG00000103381.7	1494.31510	2211.77530	-0.56570	3.87140	2.55440	HepG2	GRSF1
CPPED1	ENSG00000103381.7	1879.51620	2686.97940	-0.51560	9.98090	8.27870	HepG2	HDGF
CPPED1	ENSG00000103381.7	2054.33760	2992.37580	-0.54260	12.86570	11.13810	HepG2	HNRNPA2B1
CPPED1	ENSG00000103381.7	2207.27150	2966.00750	-0.42630	11.55650	10.26310	HepG2	HNRNPL
CPPED1	ENSG00000103381.7	3585.48890	2809.13570	0.35190	1.91740	1.38510	HepG2	HNRNPLL
CPPED1	ENSG00000103381.7	2855.32810	2462.99050	0.21310	3.41900	2.61010	HepG2	ILF2
CPPED1	ENSG00000103381.7	3120.80990	4100.10000	-0.39370	2.56840	1.60790	HepG2	KHSRP
CPPED1	ENSG00000103381.7	3354.13000	4324.71280	-0.36670	2.96070	2.28330	HepG2	MAGOH
CPPED1	ENSG00000103381.7	3471.11180	4348.85290	-0.32520	2.24790	1.67550	HepG2	MATR3
CPPED1	ENSG00000103381.7	2752.70510	4451.24000	-0.69340	8.82560	7.72960	HepG2	NCBP2
CPPED1	ENSG00000103381.7	3128.91440	2169.85550	0.52800	2.40950	1.39510	HepG2	NONO
CPPED1	ENSG00000103381.7	2446.03640	4215.60880	-0.78530	30.63000	28.98220	HepG2	PCBP1
CPPED1	ENSG00000103381.7	3687.64640	2718.98080	0.43950	2.51070	1.34580	HepG2	PRPF6
CPPED1	ENSG00000103381.7	2855.05110	1822.38340	0.64760	7.61500	6.35480	HepG2	PRPF8
CPPED1	ENSG00000103381.7	2770.84900	4289.46370	-0.63050	20.10600	18.89030	HepG2	PTBP1
CPPED1	ENSG00000103381.7	4934.30230	3082.04600	0.67890	12.88400	11.72560	HepG2	PUF60
CPPED1	ENSG00000103381.7	2101.58010	3271.71850	-0.63860	25.09990	23.68100	HepG2	PUM1
CPPED1	ENSG00000103381.7	2163.78100	3269.33450	-0.59540	11.51010	10.19300	HepG2	PUM2
CPPED1	ENSG00000103381.7	3445.81950	2866.87870	0.26530	4.51560	3.76540	HepG2	PUS1
CPPED1	ENSG00000103381.7	3097.54640	4645.75690	-0.58480	13.33870	12.11630	HepG2	QKI
CPPED1	ENSG00000103381.7	4167.66510	2495.78260	0.73960	5.10260	4.15990	HepG2	RAVER1
CPPED1	ENSG00000103381.7	6989.90150	3957.09860	0.82070	31.37210	29.99970	HepG2	RBM22
CPPED1	ENSG00000103381.7	3282.63550	4216.26190	-0.36110	4.42330	3.58690	HepG2	RBM25
CPPED1	ENSG00000103381.7	3109.79790	2118.29700	0.55380	5.54950	4.03880	HepG2	RCC2
CPPED1	ENSG00000103381.7	3439.87600	4773.82430	-0.47280	5.96970	5.22490	HepG2	NELFE
CPPED1	ENSG00000103381.7	3174.29840	4446.05410	-0.48610	13.05930	11.86780	HepG2	RECQL
CPPED1	ENSG00000103381.7	5386.67270	4076.41270	0.40200	5.04500	4.15950	HepG2	RPLP0
CPPED1	ENSG00000103381.7	3192.91050	2455.81860	0.37860	3.19770	2.03630	HepG2	RPS5
CPPED1	ENSG00000103381.7	2301.30230	1802.68790	0.35220	2.27360	1.55380	HepG2	RRP9
CPPED1	ENSG00000103381.7	2858.62750	3680.10890	-0.36440	2.15100	1.55530	HepG2	SF3A3
CPPED1	ENSG00000103381.7	3068.94210	4466.02150	-0.54120	15.78820	14.55320	HepG2	SF3B4
CPPED1	ENSG00000103381.7	3732.53400	2955.18220	0.33680	7.89080	6.79770	HepG2	SLBP
CPPED1	ENSG00000103381.7	3048.35840	2504.18930	0.28360	5.76000	4.88610	HepG2	SMN1
CPPED1	ENSG00000103381.7	1902.53600	3093.92670	-0.70150	2.39550	1.67050	HepG2	SNRNP70
CPPED1	ENSG00000103381.7	5103.31090	4469.45770	0.19120	3.18940	2.66420	HepG2	SRFBP1
CPPED1	ENSG00000103381.7	5535.07520	4661.50400	0.24770	4.27460	3.71820	HepG2	SRSF1
CPPED1	ENSG00000103381.7	3213.06090	3718.10690	-0.21060	2.41240	1.75940	HepG2	SRSF7
CPPED1	ENSG00000103381.7	2609.79010	3792.33390	-0.53920	16.07200	14.93910	HepG2	SRSF9
CPPED1	ENSG00000103381.7	6517.27130	3880.65310	0.74790	19.79100	18.68930	HepG2	SSB
CPPED1	ENSG00000103381.7	1493.08340	2087.90040	-0.48380	3.42350	2.18630	HepG2	STIP1
CPPED1	ENSG00000103381.7	4706.36040	3460.80740	0.44340	13.17360	11.98320	HepG2	SUCLG1
CPPED1	ENSG00000103381.7	2722.70280	4189.78730	-0.62180	15.58800	14.41920	HepG2	TAF15
CPPED1	ENSG00000103381.7	963.94110	1576.40260	-0.70960	7.99060	6.46890	HepG2	TFIP11
CPPED1	ENSG00000103381.7	2639.13530	3850.00740	-0.54480	9.52040	7.98640	HepG2	TIA1
CPPED1	ENSG00000103381.7	3688.21990	2343.12070	0.65440	14.03970	13.06480	HepG2	TIAL1
CPPED1	ENSG00000103381.7	1941.73130	2363.88550	-0.28380	4.10520	3.44590	HepG2	TRIM56
CPPED1	ENSG00000103381.7	4417.16000	3103.48650	0.50910	6.42340	5.48350	HepG2	U2AF1
CPPED1	ENSG00000103381.7	4070.96990	3150.96800	0.36950	8.25530	7.30980	HepG2	UTP3
CPPED1	ENSG00000103381.7	2858.05460	2315.26970	0.30380	2.01910	1.39130	HepG2	XRN2
CPPED1	ENSG00000103381.7	3154.45860	2555.75040	0.30350	6.00060	5.07160	HepG2	ZC3H8
CPPED1	ENSG00000103381.7	731.91540	543.75880	0.42860	2.08180	1.51280	K562	AKAP8L
CPPED1	ENSG00000103381.7	540.20830	413.63220	0.38510	2.61530	1.34870	K562	BCCIP
CPPED1	ENSG00000103381.7	609.08750	397.64060	0.61510	4.57260	3.44010	K562	BOP1
CPPED1	ENSG00000103381.7	658.61150	407.30870	0.69320	6.54130	4.62370	K562	CIRBP
CPPED1	ENSG00000103381.7	888.92040	500.92410	0.82740	5.33950	3.80180	K562	CNOT7
CPPED1	ENSG00000103381.7	993.57770	670.08960	0.56820	7.69920	5.83230	K562	CPEB4
CPPED1	ENSG00000103381.7	446.63160	325.60190	0.45590	2.49400	1.63010	K562	EFTUD2
CPPED1	ENSG00000103381.7	1116.21780	581.17770	0.94150	19.92820	18.25750	K562	EIF2S2
CPPED1	ENSG00000103381.7	599.76370	430.18170	0.47930	3.18180	2.25940	K562	FMR1
CPPED1	ENSG00000103381.7	539.60350	379.52430	0.50760	3.17010	1.83980	K562	HNRNPK
CPPED1	ENSG00000103381.7	393.93160	611.97170	-0.63550	6.76630	5.36540	K562	HNRNPU
CPPED1	ENSG00000103381.7	646.47670	380.19400	0.76580	6.03530	4.27610	K562	IGF2BP2
CPPED1	ENSG00000103381.7	494.22110	344.68000	0.51980	2.48970	1.60720	K562	KRR1
CPPED1	ENSG00000103381.7	581.44000	394.05280	0.56110	4.41090	3.28730	K562	METAP2
CPPED1	ENSG00000103381.7	560.99180	320.80650	0.80620	6.75450	4.56830	K562	NONO
CPPED1	ENSG00000103381.7	561.31630	355.34480	0.65950	5.50910	4.12010	K562	PCBP2
CPPED1	ENSG00000103381.7	333.95130	606.73030	-0.86140	7.62050	6.24100	K562	PCBP3
CPPED1	ENSG00000103381.7	227.73790	465.37310	-1.03100	11.88390	10.28020	K562	POLR2G
CPPED1	ENSG00000103381.7	573.27030	316.84800	0.85530	7.66500	6.40910	K562	PRPF8
CPPED1	ENSG00000103381.7	563.31150	388.06190	0.53750	4.58770	3.75310	K562	PTBP1
CPPED1	ENSG00000103381.7	912.21520	539.17860	0.75850	8.84500	7.92260	K562	PUS1
CPPED1	ENSG00000103381.7	598.64990	372.01710	0.68620	6.37150	5.02600	K562	RBM22
CPPED1	ENSG00000103381.7	579.52540	317.35080	0.86870	3.01070	1.73770	K562	SF1
CPPED1	ENSG00000103381.7	589.91470	383.89170	0.61970	4.11670	2.91380	K562	SF3B1
CPPED1	ENSG00000103381.7	399.54060	302.84110	0.39970	2.40520	1.61100	K562	SF3B4
CPPED1	ENSG00000103381.7	582.85880	380.44810	0.61530	5.34370	4.36800	K562	SRSF1
CPPED1	ENSG00000103381.7	437.97180	282.31220	0.63340	3.90710	2.56300	K562	U2AF1
CPPED1	ENSG00000103381.7	468.52600	291.56050	0.68420	6.21880	5.02370	K562	U2AF2
CPPED1	ENSG00000103381.7	1104.94240	659.90910	0.74350	10.49820	9.21370	K562	UPF1
CPPED1	ENSG00000103381.7	879.22110	546.75270	0.68520	3.47460	1.96920	K562	UTP18
CPPED1	ENSG00000103381.7	674.54600	463.51680	0.54120	3.55610	2.18810	K562	UTP3
CPPED1	ENSG00000103381.7	728.34310	564.66700	0.36710	2.61990	1.76620	K562	WDR3
CPPED1	ENSG00000103381.7	991.91500	773.52250	0.35870	2.81140	1.50650	K562	WRN
CPPED1	ENSG00000103381.7	453.14380	330.61910	0.45470	2.53330	1.39160	K562	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CPPED1 is not available on ENCORE database.

2 RBPs can affect the splicing of CPPED1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	CPPED1	ENSG00000103381.7	chr16	-	12798480	12798906			12756918	12758972	12875041	12875260	-0.18700	0.00000	0.00000	excluded	HepG2	SF3A3
SE	CPPED1	ENSG00000103381.7	chr16	-	12798480	12798906			12756918	12758972	12875041	12875260	-0.23100	0.00000	0.00000	excluded	HepG2	SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CPPED1

General Information

Functions

Localization

Domains (AlphaFold: CPPED1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CPPED1 is not avaliable on ENCORE database.

16 proteins are bound to CPPED1 RNA:

eCLIP assay for CPPED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CPPED1 is not available on ENCORE database.

95 RBPs can affect the gene expression of CPPED1 :

The Knockdown/knockout RNA-Seq assay for CPPED1 is not available on ENCORE database.

2 RBPs can affect the splicing of CPPED1 :

The Knockdown/knockout RNA-Seq assay for CPPED1 is not avaliable on ENCORE database.