CIB1

General Information

Gene Name : CIB1
Gene ID : ENSG00000185043.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CIB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CIB1	ENSG00000185043.11	26.93	56.50	41.72	ENCSR000AEF
HepG2	CIB1	ENSG00000185043.11	58.52	36.29	47.41	ENCSR985KAT
K562	CIB1	ENSG00000185043.11	99.58	72.04	85.81	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CIB1 is not avaliable on ENCORE database.

Proteins bound to RNA

CIB1 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for CIB1 is not avaliable on ENCORE database.

15 proteins are bound to CIB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	90775388	90775459	-	CDS,intron-Distal,intron-Proximal	6.96454	25.97718	K562	AQR
chr15	90774697	90774799	-	CDS,intron-Distal,intron-Proximal	5.33738	19.65719	K562	AQR
chr15	90777067	90777153	-	5'-UTR,CDS,intron-Distal	3.17521	12.46362	K562	DDX3X
chr15	90774172	90774193	-	CDS,intron-Distal	3.46330	12.20820	K562	YBX3
chr15	90776908	90776934	-	CDS,intron-Distal	3.33515	8.60695	K562	DDX3X
chr15	90777072	90777148	-	5'-UTR,CDS,intron-Distal	4.18702	8.43072	HepG2	DDX3X
chr15	90775397	90775458	-	CDS,intron-Distal,intron-Proximal	5.04806	8.11807	HepG2	PRPF8
chr15	90773618	90773677	-	3'-UTR,intron-Distal	5.18977	7.86232	HepG2	LARP4
chr15	90773607	90773679	-	3'-UTR,intron-Distal	3.99641	7.66579	K562	PABPC4
chr15	90774193	90774237	-	CDS,intron-Distal,intron-Proximal	3.03033	7.54748	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for CIB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CIB1 is not available on ENCORE database.
98 RBPs can affect the levels of CIB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CIB1 is not available on ENCORE database.

98 RBPs can affect the gene expression of CIB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CIB1	ENSG00000185043.6	1214.83110	423.00800	1.52190	60.82000	59.13590	HepG2	ZNF622
CIB1	ENSG00000185043.6	2253.05940	1037.89020	1.11810	42.46870	40.29080	K562	AGGF1
CIB1	ENSG00000185043.6	284.71660	707.67550	-1.31360	23.11740	21.57000	HepG2	QKI
CIB1	ENSG00000185043.6	2219.58380	1079.99450	1.03920	22.92370	20.69880	K562	AKAP8L
CIB1	ENSG00000185043.6	787.27530	439.13770	0.84210	14.72120	13.56750	HepG2	TRIM56
CIB1	ENSG00000185043.6	1323.03780	623.59190	1.08510	14.02390	12.76820	HepG2	DDX6
CIB1	ENSG00000185043.6	1885.06860	1043.56120	0.85300	13.59740	12.27670	K562	RBM15
CIB1	ENSG00000185043.6	252.99980	628.21490	-1.31210	13.84630	12.00540	K562	G3BP2
CIB1	ENSG00000185043.6	637.83300	1022.48070	-0.68080	12.57690	11.71400	HepG2	SRFBP1
CIB1	ENSG00000185043.6	782.42840	1271.55240	-0.70060	12.72080	11.51950	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CIB1 is not available on ENCORE database.

12 RBPs can affect the splicing of CIB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90775450	90775559	90776900	90776935	0.62100	0.00000	0.00000	longer	K562	U2AF2
A3SS	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90775450	90775559	90776900	90776935	0.35800	0.00000	0.00001	longer	HepG2	U2AF2
A3SS	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90775450	90775559	90776900	90776935	0.11300	0.00000	0.00000	longer	K562	AQR
A3SS	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90775450	90775559	90776900	90776935	0.33100	0.00000	0.00000	longer	HepG2	U2AF1
A3SS	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90775450	90775559	90776900	90776935	0.46400	0.00000	0.00000	longer	K562	U2AF1
SE	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90774588	90774739	90776900	90776935	-0.08100	0.00004	0.01100	excluded	K562	RBM22
MXE	CIB1	ENSG00000185043.6	chr15	-	90775450	90775559	90776900	90776935	90774588	90774739	90777066	90777279	0.15100	0.00004	0.00389	1included	HepG2	DDX3X
SE	CIB1	ENSG00000185043.6	chr15	-	90774915	90775020			90774588	90774739	90776900	90776935	-0.39000	0.00006	0.04119	excluded	K562	ABCF1
MXE	CIB1	ENSG00000185043.6	chr15	-	90775450	90775559	90776900	90776935	90774588	90774739	90777066	90777279	0.07500	0.00020	0.01166	1included	HepG2	HNRNPL
SE	CIB1	ENSG00000185043.6	chr15	-	90775450	90775679			90774588	90774739	90776900	90776935	-0.07400	0.00027	0.01701	excluded	K562	HNRNPK

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CIB1

General Information

Functions

Localization

Domains (AlphaFold: CIB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CIB1 is not avaliable on ENCORE database.

15 proteins are bound to CIB1 RNA:

eCLIP assay for CIB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CIB1 is not available on ENCORE database.

98 RBPs can affect the gene expression of CIB1 :

The Knockdown/knockout RNA-Seq assay for CIB1 is not available on ENCORE database.

12 RBPs can affect the splicing of CIB1 :

The Knockdown/knockout RNA-Seq assay for CIB1 is not avaliable on ENCORE database.