CDC42BPA

General Information

Gene Name : CDC42BPA
Gene ID : ENSG00000143776.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDC42BPA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDC42BPA	ENSG00000143776.18	0.07	0.06	0.07	ENCSR000AEF
HepG2	CDC42BPA	ENSG00000143776.18	4.07	6.15	5.11	ENCSR985KAT
K562	CDC42BPA	ENSG00000143776.18	22.81	23.20	23.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDC42BPA is not avaliable on ENCORE database.

Proteins bound to RNA

CDC42BPA RNA is bound by 42 proteins.

CanvasJS.com

eCLIP assay for CDC42BPA is not avaliable on ENCORE database.

42 proteins are bound to CDC42BPA RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	227179568	227179669	-	3'-UTR,intron-Distal	5.69542	76.08472	K562	ILF3
chr1	227179572	227179671	-	3'-UTR,intron-Distal	7.01047	45.94919	HepG2	PCBP2
chr1	227246361	227246455	-	intron-Distal	5.72347	31.45872	K562	QKI
chr1	227501853	227501945	-	intron-Distal	5.00871	26.30737	K562	KHSRP
chr1	227179580	227179664	-	3'-UTR,intron-Distal	4.99400	24.39714	K562	HNRNPK
chr1	227440835	227440956	-	intron-Distal	3.96184	23.21951	K562	PTBP1
chr1	227179572	227179660	-	3'-UTR,intron-Distal	3.61732	20.56467	K562	CSTF2T
chr1	227222499	227222613	-	intron-Distal,intron-Proximal	4.58231	20.10388	K562	KHSRP
chr1	227381494	227381636	-	CDS,intron-Distal,intron-Proximal	3.93374	18.34974	K562	DDX24
chr1	227462714	227462793	-	intron-Distal	4.57396	17.71925	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 246 entries

eCLIP assay for CDC42BPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDC42BPA is not available on ENCORE database.
101 RBPs can affect the levels of CDC42BPA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDC42BPA is not available on ENCORE database.

101 RBPs can affect the gene expression of CDC42BPA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDC42BPA	ENSG00000143776.14	2368.30170	5342.03460	-1.17350	37.19010	34.31640	K562	GRSF1
CDC42BPA	ENSG00000143776.14	2963.35240	1649.41310	0.84520	33.32940	32.09330	HepG2	SRFBP1
CDC42BPA	ENSG00000143776.14	2696.17050	4531.94280	-0.74920	30.64120	28.42890	K562	MTPAP
CDC42BPA	ENSG00000143776.14	3604.58180	5855.13840	-0.69990	27.30670	25.63720	K562	AGGF1
CDC42BPA	ENSG00000143776.14	3397.17580	5887.14280	-0.79320	24.97760	23.11790	K562	RBM15
CDC42BPA	ENSG00000143776.14	2660.83950	5036.72600	-0.92060	20.15860	18.74300	K562	AQR
CDC42BPA	ENSG00000143776.14	1650.10090	3022.08240	-0.87300	19.40170	17.89870	K562	HNRNPC
CDC42BPA	ENSG00000143776.14	3605.27540	6092.50650	-0.75690	15.07650	13.34680	K562	AKAP8L
CDC42BPA	ENSG00000143776.14	2211.92470	1370.00930	0.69100	14.06290	12.81140	HepG2	QKI
CDC42BPA	ENSG00000143776.14	1942.14150	1378.89060	0.49400	12.08260	11.14060	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDC42BPA is not available on ENCORE database.

21 RBPs can affect the splicing of CDC42BPA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227198578	227198764	227192694	227192812	227203780	227203898	0.14100	0.00002	included	K562	SF3B4
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227441764	227441856	227400836	227400920	227504705	227505826	-0.20000	0.00000	excluded	K562	AKAP8L
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227441764	227441856	227400836	227400920	227504705	227505826	-0.23700	0.00000	excluded	K562	PUS1
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227239581	227239686	227235627	227235711	227257477	227257554	0.39000	0.00025	included	HepG2	NCBP2
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227239581	227239686	227235627	227235711	227257477	227257554	0.40800	0.00000	included	K562	HNRNPL
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227441764	227441856	227400836	227400920	227504705	227505826	-0.14500	0.00020	excluded	K562	RBM15
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227198578	227198764	227192694	227192812	227203780	227203898	0.05500	0.00009	included	K562	SF3B1
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227239581	227239686	227235627	227235711	227257477	227257554	0.62200	0.00003	included	HepG2	HNRNPU
SE	CDC42BPA	ENSG00000143776.14	chr1	-	227198578	227198764	227192694	227192812	227203780	227203898	0.79600	0.00000	included	K562	PTBP1
A3SS	CDC42BPA	ENSG00000143776.14	chr1	-	227192694	227192912	227192694	227192812	227203780	227203898	0.08200	0.00003	longer	K562	AQR

Showing 1 to 10 of 36 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDC42BPA

General Information

Functions

Localization

Domains (AlphaFold: CDC42BPA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDC42BPA is not avaliable on ENCORE database.

42 proteins are bound to CDC42BPA RNA:

eCLIP assay for CDC42BPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDC42BPA is not available on ENCORE database.

101 RBPs can affect the gene expression of CDC42BPA :

The Knockdown/knockout RNA-Seq assay for CDC42BPA is not available on ENCORE database.

21 RBPs can affect the splicing of CDC42BPA :

The Knockdown/knockout RNA-Seq assay for CDC42BPA is not avaliable on ENCORE database.