CAPN10

General Information

Gene Name : CAPN10
Gene ID : ENSG00000142330.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CAPN10)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CAPN10	ENSG00000142330.19	1.52	4.95	3.24	ENCSR000AEF
HepG2	CAPN10	ENSG00000142330.19	19.80	6.10	12.95	ENCSR985KAT
K562	CAPN10	ENSG00000142330.19	6.46	3.15	4.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CAPN10 is not avaliable on ENCORE database.

Proteins bound to RNA

CAPN10 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for CAPN10 is not avaliable on ENCORE database.

19 proteins are bound to CAPN10 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	241553528	241553577	+	intron-Distal	9.06602	219.24894	HepG2	QKI
chr2	241553270	241553316	+	intron-Distal	8.51624	217.65174	HepG2	QKI
chr2	241553577	241553619	+	intron-Distal	9.82440	203.20396	HepG2	QKI
chr2	241553456	241553484	+	intron-Distal	8.14195	186.95559	HepG2	QKI
chr2	241553068	241553139	+	intron-Distal	7.98821	178.79580	HepG2	QKI
chr2	241553446	241553456	+	intron-Distal	8.53929	166.06623	HepG2	QKI
chr2	241553317	241553337	+	intron-Distal	8.13026	165.65780	HepG2	QKI
chr2	241553139	241553194	+	intron-Distal	8.36057	157.18967	HepG2	QKI
chr2	241553246	241553269	+	intron-Distal	8.50609	151.20559	HepG2	QKI
chr2	241553413	241553440	+	intron-Distal	9.34272	148.53347	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 91 entries

eCLIP assay for CAPN10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CAPN10 is not available on ENCORE database.
69 RBPs can affect the levels of CAPN10.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.

69 RBPs can affect the gene expression of CAPN10 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CAPN10	ENSG00000142330.15	683.27680	333.81690	1.03330	18.37960	16.96650	HepG2	SRSF5
CAPN10	ENSG00000142330.15	453.17680	202.32150	1.16330	16.80500	15.57290	HepG2	TRIM56
CAPN10	ENSG00000142330.15	413.51110	183.78120	1.16980	14.61300	13.30830	HepG2	SAFB2
CAPN10	ENSG00000142330.15	332.58500	649.40490	-0.96540	14.03590	13.14690	HepG2	SRSF1
CAPN10	ENSG00000142330.15	398.81180	184.06630	1.11540	13.36590	11.81670	HepG2	PPIL4
CAPN10	ENSG00000142330.15	584.05810	324.18930	0.84920	12.82540	11.50470	HepG2	SLBP
CAPN10	ENSG00000142330.15	367.16160	183.36790	1.00160	12.02760	10.77120	HepG2	DNAJC2
CAPN10	ENSG00000142330.15	652.22330	379.62860	0.78070	11.73960	10.60880	HepG2	SUCLG1
CAPN10	ENSG00000142330.15	396.89820	206.37130	0.94340	10.73450	9.60690	HepG2	HNRNPU
CAPN10	ENSG00000142330.15	649.60070	336.87220	0.94730	10.30610	9.30380	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 75 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.

3 RBPs can affect the splicing of CAPN10 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CAPN10	ENSG00000142330.15	chr2	+	241535350	241535569	241534440	241534721	241535735	241535938	0.25800	0.00044	0.03956	included	HepG2	TBRG4
SE	CAPN10	ENSG00000142330.15	chr2	+	241535350	241535569	241534440	241534721	241535735	241535938	0.48100	0.00084	0.02404	included	K562	AGGF1
A3SS	CAPN10	ENSG00000142330.15	chr2	+	241536097	241536359	241536266	241536359	241535735	241535938	-0.36900	0.00104	0.04149	shorter	HepG2	U2AF1

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CAPN10

General Information

Functions

Localization

Domains (AlphaFold: CAPN10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CAPN10 is not avaliable on ENCORE database.

19 proteins are bound to CAPN10 RNA:

eCLIP assay for CAPN10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.

69 RBPs can affect the gene expression of CAPN10 :

The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.

3 RBPs can affect the splicing of CAPN10 :

The Knockdown/knockout RNA-Seq assay for CAPN10 is not avaliable on ENCORE database.