BRAT1

General Information

Gene Name : BRAT1
Gene ID : ENSG00000106009.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BRAT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BRAT1	ENSG00000106009.15	0.48	2.24	1.36	ENCSR000AEF
HepG2	BRAT1	ENSG00000106009.15	16.10	2.42	9.26	ENCSR985KAT
K562	BRAT1	ENSG00000106009.15	14.65	3.92	9.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BRAT1 is not avaliable on ENCORE database.

Proteins bound to RNA

BRAT1 RNA is bound by 14 proteins.

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eCLIP assay for BRAT1 is not avaliable on ENCORE database.

14 proteins are bound to BRAT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	2581818	2581857	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.21066	15.60758	K562	SF3B4
chr7	2581857	2581889	-	intron-Distal,intron-Proximal	5.71375	15.55949	K562	SF3B4
chr7	2580563	2580590	-	intron-Distal,intron-Proximal	4.60459	14.61777	K562	AQR
chr7	2580519	2580591	-	intron-Distal,intron-Proximal	5.40846	13.79836	HepG2	EFTUD2
chr7	2580504	2580590	-	intron-Distal,intron-Proximal	6.28233	12.80845	K562	SF3B4
chr7	2580508	2580610	-	intron-Distal,intron-Proximal	4.41467	12.34418	K562	BUD13
chr7	2581816	2581892	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.04386	12.07514	HepG2	SF3B4
chr7	2584498	2584531	-	intron-Distal,intron-Proximal	5.80824	11.65826	K562	AQR
chr7	2582599	2582705	-	intron-Distal	4.60035	10.40891	K562	PRPF8
chr7	2582758	2582810	-	intron-Distal,intron-Proximal	5.63931	9.62108	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 46 entries

eCLIP assay for BRAT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BRAT1 is not available on ENCORE database.
96 RBPs can affect the levels of BRAT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.

96 RBPs can affect the gene expression of BRAT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BRAT1	ENSG00000106009.11	1457.90280	764.01240	0.93210	24.74050	23.15400	K562	AGGF1
BRAT1	ENSG00000106009.11	713.78880	288.53580	1.30660	22.10850	19.64600	K562	TIA1
BRAT1	ENSG00000106009.11	608.31180	295.29850	1.04250	18.86130	17.59200	HepG2	PUM1
BRAT1	ENSG00000106009.11	636.01900	312.36800	1.02570	17.54460	16.19630	HepG2	SUCLG1
BRAT1	ENSG00000106009.11	375.62200	155.92670	1.26830	16.67580	15.44660	HepG2	TRIM56
BRAT1	ENSG00000106009.11	359.88850	141.85430	1.34300	16.66020	14.94580	HepG2	PPIL4
BRAT1	ENSG00000106009.11	583.35830	295.08570	0.98310	12.23280	10.88110	HepG2	PUM2
BRAT1	ENSG00000106009.11	615.68190	310.30690	0.98840	12.55710	10.67330	K562	MAGOH
BRAT1	ENSG00000106009.11	1240.52730	768.18790	0.69130	11.46720	10.27570	K562	RBM15
BRAT1	ENSG00000106009.11	576.79100	279.18390	1.04670	12.43740	10.05650	K562	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.

11 RBPs can affect the splicing of BRAT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	BRAT1	ENSG00000106009.11	chr7	-	2581351	2581507	2581351	2581470	2581753	2581845	0.11300	0.00003	0.00029	longer	K562	AQR
RI	BRAT1	ENSG00000106009.11	chr7	-	2579419	2580686	2579419	2579522	2580612	2580686	-0.19500	0.00013	0.00532	excluded	K562	HNRNPC
RI	BRAT1	ENSG00000106009.11	chr7	-	2579419	2580686	2579419	2579522	2580612	2580686	-0.14500	0.00016	0.02186	excluded	K562	SAFB
RI	BRAT1	ENSG00000106009.11	chr7	-	2579419	2580686	2579419	2579522	2580612	2580686	-0.41300	0.00018	0.00640	excluded	K562	SRSF1
A3SS	BRAT1	ENSG00000106009.11	chr7	-	2579177	2579324	2579177	2579276	2579419	2580686	0.05600	0.00019	0.00157	longer	K562	AQR
RI	BRAT1	ENSG00000106009.11	chr7	-	2579419	2580686	2579419	2579522	2580612	2580686	0.33600	0.00019	0.00144	included	K562	AQR
RI	BRAT1	ENSG00000106009.11	chr7	-	2581753	2583596	2581753	2581845	2582837	2583596	0.27900	0.00034	0.00504	included	HepG2	TAF15
SE	BRAT1	ENSG00000106009.11	chr7	-	2584542	2584690	2582837	2583596	2586957	2587112	0.41800	0.00043	0.02744	included	K562	EFTUD2
RI	BRAT1	ENSG00000106009.11	chr7	-	2581753	2583596	2581753	2581845	2582837	2583596	0.12900	0.00045	0.00363	included	K562	PUS1
RI	BRAT1	ENSG00000106009.11	chr7	-	2577514	2578985	2577514	2578398	2578812	2578985	0.46400	0.00085	0.01825	included	HepG2	FUBP3

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BRAT1

General Information

Functions

Localization

Domains (AlphaFold: BRAT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BRAT1 is not avaliable on ENCORE database.

14 proteins are bound to BRAT1 RNA:

eCLIP assay for BRAT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.

96 RBPs can affect the gene expression of BRAT1 :

The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.

11 RBPs can affect the splicing of BRAT1 :

The Knockdown/knockout RNA-Seq assay for BRAT1 is not avaliable on ENCORE database.