BNIP1

General Information

Gene Name : BNIP1
Gene ID : ENSG00000113734.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BNIP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BNIP1	ENSG00000113734.17	21.77	20.96	21.37	ENCSR000AEF
HepG2	BNIP1	ENSG00000113734.17	9.92	12.18	11.05	ENCSR985KAT
K562	BNIP1	ENSG00000113734.17	19.11	18.41	18.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BNIP1 is not avaliable on ENCORE database.

Proteins bound to RNA

BNIP1 RNA is bound by 2 proteins.

CanvasJS.com

eCLIP assay for BNIP1 is not avaliable on ENCORE database.

2 proteins are bound to BNIP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	172591097	172591324	+	3'-UTR	4.43418	9.04751	K562	UPF1
chr5	172590781	172590892	+	CDS	3.83605	3.22721	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for BNIP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BNIP1 is not available on ENCORE database.
47 RBPs can affect the levels of BNIP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.

47 RBPs can affect the gene expression of BNIP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BNIP1	ENSG00000113734.13	874.44130	449.43010	0.96020	12.22440	11.12960	K562	PUS1
BNIP1	ENSG00000113734.13	49.77740	180.67710	-1.85990	9.92920	8.66650	HepG2	EIF4B
BNIP1	ENSG00000113734.13	704.51110	435.53470	0.69370	9.14420	8.18820	K562	AGGF1
BNIP1	ENSG00000113734.13	150.07410	332.17330	-1.14630	10.18310	8.02640	K562	NELFE
BNIP1	ENSG00000113734.13	693.84760	437.91500	0.66390	7.65260	6.69670	K562	RBM15
BNIP1	ENSG00000113734.13	247.61480	115.38510	1.10150	6.71650	5.63440	HepG2	SF3A3
BNIP1	ENSG00000113734.13	716.24440	453.19580	0.66020	6.52500	5.48920	K562	AKAP8L
BNIP1	ENSG00000113734.13	86.33670	192.94580	-1.16020	6.11120	5.35990	HepG2	NELFE
BNIP1	ENSG00000113734.13	381.66320	206.49880	0.88610	6.40070	5.26100	K562	PRPF8
BNIP1	ENSG00000113734.13	557.89980	227.28680	1.29540	6.88400	5.10520	K562	PABPN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.

11 RBPs can affect the splicing of BNIP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BNIP1	ENSG00000113734.13	chr5	+	172578568	172578697			172573868	172573961	172581324	172581416	-0.13700	0.00000	0.00002	excluded	K562	PUS1
SE	BNIP1	ENSG00000113734.13	chr5	+	172578568	172578697			172573868	172573961	172581324	172581416	0.61700	0.00000	0.00000	included	K562	HNRNPC
A3SS	BNIP1	ENSG00000113734.13	chr5	+	172573841	172573961			172573868	172573961	172571444	172571632	0.16100	0.00000	0.00000	longer	K562	AQR
SE	BNIP1	ENSG00000113734.13	chr5	+	172573868	172573961			172571517	172571632	172581324	172581416	-0.12200	0.00001	0.00016	excluded	K562	AQR
SE	BNIP1	ENSG00000113734.13	chr5	+	172573868	172573961			172571444	172571632	172581324	172581416	-0.10100	0.00001	0.00033	excluded	K562	U2AF1
SE	BNIP1	ENSG00000113734.13	chr5	+	172578568	172578697			172573868	172573961	172581324	172581416	-0.15900	0.00018	0.09031	excluded	K562	UTP3
MXE	BNIP1	ENSG00000113734.13	chr5	+	172581324	172581416	172585746	172585848	172571444	172571632	172586935	172587054	0.12800	0.00068	0.04269	1included	K562	HNRNPK
MXE	BNIP1	ENSG00000113734.13	chr5	+	172573868	172573961	172581324	172581416	172571517	172571632	172585746	172585848	0.12200	0.00080	0.03353	1included	K562	TAF15
SE	BNIP1	ENSG00000113734.13	chr5	+	172578568	172578697			172573868	172573961	172581324	172581416	-0.11100	0.00113	0.04138	excluded	K562	HNRNPU
SE	BNIP1	ENSG00000113734.13	chr5	+	172573868	172573961			172571444	172571632	172581324	172581416	-0.11100	0.00177	0.03077	excluded	K562	HNRNPC

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BNIP1

General Information

Functions

Localization

Domains (AlphaFold: BNIP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BNIP1 is not avaliable on ENCORE database.

2 proteins are bound to BNIP1 RNA:

eCLIP assay for BNIP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.

47 RBPs can affect the gene expression of BNIP1 :

The Knockdown/knockout RNA-Seq assay for BNIP1 is not available on ENCORE database.

11 RBPs can affect the splicing of BNIP1 :

The Knockdown/knockout RNA-Seq assay for BNIP1 is not avaliable on ENCORE database.