STMN1

General Information

Gene Name : STMN1
Gene ID : ENSG00000117632.22
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STMN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	STMN1	ENSG00000117632.22	646.91	587.73	617.32	ENCSR000AEF
HepG2	STMN1	ENSG00000117632.22	270.81	585.83	428.32	ENCSR985KAT
K562	STMN1	ENSG00000117632.22	759.27	977.30	868.28	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STMN1 is not avaliable on ENCORE database.

Proteins bound to RNA

STMN1 RNA is bound by 38 proteins.

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eCLIP assay for STMN1 is not avaliable on ENCORE database.

38 proteins are bound to STMN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	26227087	26227171	-	3'-UTR,intron-Distal,intron-Proximal	4.32381	400.00000	K562	PABPC4
chr1	26227107	26227168	-	3'-UTR,intron-Distal,intron-Proximal	6.20806	400.00000	HepG2	SUB1
chr1	26231160	26231212	-	5'-UTR,CDS,intron-Distal	4.05581	400.00000	K562	DDX3X
chr1	26227985	26228104	-	CDS,intron-Distal,intron-Proximal	3.04460	400.00000	K562	ZNF800
chr1	26227213	26227246	-	3'-UTR,intron-Distal,intron-Proximal	5.36451	85.57973	HepG2	SUB1
chr1	26227173	26227240	-	3'-UTR,intron-Distal,intron-Proximal	4.17594	80.46218	K562	TIA1
chr1	26227457	26227467	-	3'-UTR,intron-Distal	3.94581	75.18178	K562	PABPC4
chr1	26227434	26227448	-	3'-UTR,intron-Distal	4.68363	74.31465	K562	PABPC4
chr1	26227448	26227457	-	3'-UTR,intron-Distal	4.09068	73.43810	K562	PABPC4
chr1	26231216	26231229	-	5'-UTR,intron-Distal	4.10122	71.06753	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 127 entries

eCLIP assay for STMN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STMN1 is not available on ENCORE database.
169 RBPs can affect the levels of STMN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STMN1 is not available on ENCORE database.

169 RBPs can affect the gene expression of STMN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STMN1	ENSG00000117632.16	326.75250	2910.39720	-3.15490	99999.99999	99999.99999	HepG2	ZNF622
STMN1	ENSG00000117632.16	405.14340	3222.07680	-2.99150	144.52170	141.81210	HepG2	BOP1
STMN1	ENSG00000117632.16	715.28330	3926.79320	-2.45680	128.17190	125.75790	HepG2	TIAL1
STMN1	ENSG00000117632.16	732.98920	2646.27760	-1.85210	107.50350	104.53310	HepG2	UPF1
STMN1	ENSG00000117632.16	731.86890	3767.67990	-2.36400	106.78640	104.14390	HepG2	RPLP0
STMN1	ENSG00000117632.16	943.94050	3961.48960	-2.06930	102.74290	99.95010	HepG2	TRIM56
STMN1	ENSG00000117632.16	1006.74050	2717.12920	-1.43240	71.57690	69.55550	HepG2	SRSF9
STMN1	ENSG00000117632.16	1387.83620	3436.29840	-1.30800	69.42390	67.08510	HepG2	SRSF7
STMN1	ENSG00000117632.16	2240.76300	6666.17270	-1.57290	62.63420	60.26270	HepG2	PUF60
STMN1	ENSG00000117632.16	3893.34360	7076.38380	-0.86200	61.08800	59.07260	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 206 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STMN1 is not available on ENCORE database.

3 RBPs can affect the splicing of STMN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	STMN1	ENSG00000117632.16	chr1	-	26231318	26231408			26231154	26231229	26232879	26232957	0.22100	0.00000	0.00002	included	K562	AQR
A3SS	STMN1	ENSG00000117632.16	chr1	-	26231154	26231349			26231154	26231229	26232879	26232957	0.68300	0.00000	0.00000	longer	K562	AQR
RI	STMN1	ENSG00000117632.16	chr1	-	26227981	26230304			26227981	26228173	26230131	26230304	0.05300	0.00000	0.00004	included	HepG2	UCHL5
MXE	STMN1	ENSG00000117632.16	chr1	-	26230131	26230296	26231154	26231229	26227981	26228173	26232879	26232957	-0.10300	0.00001	0.00805	2included	K562	RPS3

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STMN1

General Information

Functions

Localization

Domains (AlphaFold: STMN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STMN1 is not avaliable on ENCORE database.

38 proteins are bound to STMN1 RNA:

eCLIP assay for STMN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STMN1 is not available on ENCORE database.

169 RBPs can affect the gene expression of STMN1 :

The Knockdown/knockout RNA-Seq assay for STMN1 is not available on ENCORE database.

3 RBPs can affect the splicing of STMN1 :

The Knockdown/knockout RNA-Seq assay for STMN1 is not avaliable on ENCORE database.